bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_1265_orf2
Length=108
Score E
Sequences producing significant alignments: (Bits) Value
3702.AT1G34220.1 72.0 5e-12
> 3702.AT1G34220.1
Length=649
Score = 72.0 bits (175), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
Query 2 WKATKLATLFHGRRWPRSLKMAISRARMCTNRLQNSIRLQRKEIAGFLREGREEGARLKG 61
+KA K TL LK+ I R ++ NR + I+ R+EIA L G+E AR++
Sbjct 12 FKAAKCKTL---------LKLTIPRIKLIRNRREAQIKQMRREIAKLLETGQEATARIRV 62
Query 62 EHLLREYRLERAMEILVTVCELLISRLSYLATERTCPPDLDSPIHTL 108
EH++RE ++ A EIL CEL+ RL + +R CP DL I ++
Sbjct 63 EHIIREEKMMAAQEILELFCELIAVRLPIIEAQRECPLDLKEAISSV 109
Lambda K H
0.325 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 22451482439
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40