bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1197_orf1 Length=112 Score E Sequences producing significant alignments: (Bits) Value 391165.GbCGDNIH1_2066 128 6e-29 > 391165.GbCGDNIH1_2066 Length=463 Score = 128 bits (321), Expect = 6e-29, Method: Composition-based stats. Identities = 61/112 (54%), Positives = 84/112 (75%), Gaps = 2/112 (1%) Query 1 LIGLELGSVWRNMGAEVTVVEFCDKIIPALDVEIGRAFQKLLERQGIKFMFSTKVVGSQK 60 +IGLELGSVWR +GAEVTV+E+ D+I+P +D E+ +AFQ++LE+QG+ F TKV G+Q Sbjct 180 VIGLELGSVWRRLGAEVTVIEYLDRIVPGMDQEVAKAFQRILEKQGLAFRLGTKVTGAQV 239 Query 61 SNENDEVTLELENAKSGDTLKLHCDVVLVAVGRRPYTRDLGLEELGIELDKR 112 + VTL LE AK G+T L D+VLVA+GRRPY LGL+++G+ D+R Sbjct 240 --DEGGVTLTLEPAKGGETDTLQADIVLVAIGRRPYLDGLGLDDIGVVRDER 289 Lambda K H 0.319 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22937329312 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40