bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1088_orf3 Length=261 Score E Sequences producing significant alignments: (Bits) Value 5807.cgd6_3790 410 2e-113 > 5807.cgd6_3790 Length=339 Score = 410 bits (1055), Expect = 2e-113, Method: Compositional matrix adjust. Identities = 195/259 (75%), Positives = 224/259 (86%), Gaps = 1/259 (0%) Query 1 KDPAAIPWGKVGAHYVCESTGVFTNKEKAGLHISGGAKKVIISAPPKDDTPMFVMGVNHE 60 KDPA IPWG GA VCESTGVFT +EKA LH+ GGAKKVIISAPPKD+ PM+VMGVN+ Sbjct 79 KDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNT 138 Query 61 EYQPT-LQVVPNASCTTNCLAPLAKVVHEKFGIVEGLMTTVHAMTANQLTVDGPSKGGKD 119 EY P+ V+ NASCTTNCLAPLAK++++KFGIVEGLMTTVH++TANQLTVDGPSKGGKD Sbjct 139 EYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKD 198 Query 120 WRAGRCAGSNIIPASTGAAKAVGKVIPSLNGKFTGMAFRVPTPDVSVVDLTCRLSKPAKY 179 WRAGRCAG+NIIPASTGAAKAVGKVIP+LNGK TGMA RVPTPDVSVVDLTC+L+KPA Sbjct 199 WRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASI 258 Query 180 EDIVAAIRAASEGPLKGILGVTEEEVVSQDFCGDKRSSIFDVKAGIQLNDSFVKLVSWYD 239 E+I A++ AS GP+KGI+G T ++VVS DF G K SSIFD A I LNDSFVKL+SWYD Sbjct 259 EEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYD 318 Query 240 NEWGYSNRLVDLAIYMSKK 258 NE GYSNRLVDLA+Y++ + Sbjct 319 NESGYSNRLVDLAVYVASR 337 Lambda K H 0.316 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 81345714075 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40