bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1053_orf1 Length=97 Score E Sequences producing significant alignments: (Bits) Value 3702.AT1G58050.1 111 6e-24 > 3702.AT1G58050.1 Length=1417 Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 51/86 (59%), Positives = 66/86 (76%), Gaps = 0/86 (0%) Query 12 WVLPCHASLHPKQQQKVFAPPPSGWRKVVVATNIAETSITISDVGYVVDCGTHKVLRYDP 71 W+LP H+S+ +Q+KVF PP G RKV++ATNIAETSITI DV YV+D G HK RY+P Sbjct 915 WLLPLHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIEDVVYVIDSGKHKENRYNP 974 Query 72 SKRSSKLQEELITKANAQQRRGRAGR 97 K+ S + E+ ++KANA+QR GRAGR Sbjct 975 HKKLSSMVEDWVSKANARQRMGRAGR 1000 Lambda K H 0.318 0.131 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22472223870 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40