bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_1052_orf1 Length=100 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0188 88.2 7e-17 > 5833.PF11_0188 Length=930 Score = 88.2 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 43/85 (50%), Positives = 59/85 (69%), Gaps = 8/85 (9%) Query 24 EALAEDTLASRVTAVKFSERLLSSPAVVSGFLSPTLRRMMKATLQGA--------PEAQL 75 +A + L S+ + VKFSERL +SPAVV+GFLSPTLR++MKAT++ + Sbjct 749 QAYFKQVLGSKCSDVKFSERLTTSPAVVTGFLSPTLRKVMKATMKNSDFNDNTNNSNNMN 808 Query 76 NLASLPATLELNPSHGLITSLYHLR 100 +LPATLELNPSH ++TS+YHL+ Sbjct 809 MFQNLPATLELNPSHTIVTSIYHLK 833 Lambda K H 0.316 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 23067334887 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40