bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0978_orf2 Length=210 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1315w 78.2 1e-13 > 5833.PFF1315w Length=1712 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 4/138 (2%) Query 2 FRGVDARILMEQVVPLACKAVHPEVRAAGLSLDFSGCSLLKDASVARLMDVLHGRKEDN- 60 + G + +IL E V P+ + +H VR L LDF+ C+L+KD +VA +++ ++ + N Sbjct 305 YLGYNPKILYEYVFPVIYRHLHRSVRRR-LCLDFTLCTLIKDITVANILNEIYNFETLNT 363 Query 61 --IIGGVLKSLCLDFCYEVTNKGLAALLTTHLPYLERLSLRCARSNELTFTNVATDFSAD 118 + L+ + D+C+ +T+K L L T LP L+ LS++C R+ LT + Sbjct 364 KHLFIYNLQEIYFDYCHHLTDKTLEVLAQTRLPSLKTLSIKCVRNKYLTCAPLTVMLRKS 423 Query 119 NWPNLLHFDASFTNMRLD 136 NWP +F SF+N L+ Sbjct 424 NWPVFTNFICSFSNAWLE 441 Lambda K H 0.322 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 53070928551 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40