bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0908_orf1 Length=134 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0053 85.9 3e-16 > 5833.PF11_0053 Length=1426 Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 67/97 (69%), Gaps = 7/97 (7%) Query 33 EMKMQKEQLLSEGFLNWNRTEFTKFISALIHLGRDRLEEAWQLHFSSSNKTVEDLRKYAD 92 ++K+QK++L+ +GF WN+ EF K +S LI G + +E ++ +FS+S K++ED++ Y Sbjct 1195 KIKLQKQELMKQGFAKWNKAEFNKLMSGLIIYGTNEVEYIYEKYFSNSKKSMEDIKAYLT 1254 Query 93 VFFKRYTEIEGGDRMMQRIERAEELRGAIDLQRRAIQ 129 VFF++Y +I+GG R+ +I+R+ DLQ++ I+ Sbjct 1255 VFFRKYDQIKGGVRLFDKIKRS-------DLQKKIIE 1284 Lambda K H 0.316 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22682284714 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40