bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0897_orf1 Length=132 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0880c 113 2e-24 > 5833.PFI0880c Length=396 Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 84/132 (63%), Gaps = 0/132 (0%) Query 1 DDDISYINCGTGSLSGGSALVKASGSKFFSGDKGFCLFEMSAEGLVTKFINGENGETLYE 60 D+D+++I CG+GS+S G + +K S S FFS D GFC+ E+S G+VTKF++ + GE +Y Sbjct 265 DNDMAHITCGSGSMSQGKSGMKNSKSLFFSSDIGFCVHELSNNGIVTKFVSSKKGEVIYT 324 Query 61 HKQPLKNRPERSTIDQFNYFTDMPEVTYFPVPEMGKLPGKDVFVRVVGTIGLCILTFLGT 120 HK +K + ++ +F +P V VP G + KD FVRVVGTIG+ I + + Sbjct 325 HKLNIKKKKTLDKVNALQHFAALPNVELTDVPSSGPMGNKDTFVRVVGTIGILIGSVIVF 384 Query 121 LGIATGISRAMK 132 +G ++ +S+ MK Sbjct 385 IGASSFLSKNMK 396 Lambda K H 0.319 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22851147482 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40