bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0848_orf1 Length=222 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0122 190 3e-47 > 5833.PF11_0122 Length=779 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 139/226 (61%), Gaps = 6/226 (2%) Query 1 MQFKSTSLAVWVRED-IHGEGKPVELVTSKAASVSFLSGSKGGVSVCLKIWNQYFCFLGC 59 +Q KST++A WVR+ +H G PV+L SK+ + + L+ SKG VS+ L I+NQ+ F+GC Sbjct 479 LQMKSTTIAAWVRKSKLHPRG-PVKLCASKSIAFNKLNNSKGCVSILLNIFNQFVLFIGC 537 Query 60 HMPSTSPEDRKKARGVVEQRLLEFYG--GASSWLDAFHHILWMGDFNFRTQRISVQRAVS 117 HMP+ E R+K+R + +L E++ S++ D FHH++WMGDFNFR I +++ + Sbjct 538 HMPAKDQEIRQKSREFILTKLSEYFSNKSTSNFKDVFHHVIWMGDFNFRVHGIHIEKVIH 597 Query 118 LLK-QSPTGLLAFDEWLGPHGEDMRASGFTEAPIRFPPTYKKADGRPPIDLKRSSWVEEE 176 LK + LL DE + D+ S F E PI F PTYKK RP I+ + WV++E Sbjct 598 YLKTDNLKELLKHDEGHSAYSYDLSIS-FQELPINFLPTYKKNGNRPIINRSDTEWVQKE 656 Query 177 YQTEMITQWYKGARHQERIPSWTDRIFKCSSAEISSLLRLQPDTYF 222 Y+ +WYKG + + RIPSWTDRIFK S + + L P++Y Sbjct 657 YKLIHNIKWYKGGKQETRIPSWTDRIFKWSCEKTKNCLVFVPNSYL 702 Lambda K H 0.320 0.135 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 60391056627 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40