bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0800_orf5 Length=292 Score E Sequences producing significant alignments: (Bits) Value 5833.PFL0510c 103 7e-21 > 5833.PFL0510c Length=1000 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 3/102 (2%) Query 35 RLINTKMCSRYLSKGYC-RKRDCTFAHSVEELRPTPDLRCTKWCRFVFFGLECNDARCPY 93 + TKMC +K YC + C +AHS+EEL+P PDLR TK C FV + C D C + Sbjct 23 QFFKTKMCPFQKNKNYCLNESSCHYAHSIEELKPMPDLRNTKLCDFVKKKIPCRDINCTF 82 Query 94 AHSQDELQP--QPPEYKTTLCRFAKRGKCLNGDNCRFLHPHE 133 AH D L+P YK+T+C F +GKC NG+ CRF H +E Sbjct 83 AHDIDTLKPSVHLATYKSTICSFWGKGKCFNGNKCRFAHGNE 124 Lambda K H 0.317 0.132 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 99012798885 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40