bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_0746_orf1
Length=265
Score E
Sequences producing significant alignments: (Bits) Value
5807.cgd6_500 117 3e-25
> 5807.cgd6_500
Length=1967
Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats.
Identities = 81/272 (29%), Positives = 132/272 (48%), Gaps = 32/272 (11%)
Query 1 HAVHVAQMCWLFLTRYSCRDDLTLTEQLGLMLAALAHDVDHPGVNNNSLIEEHHPLAIIY 60
HA+ V Q+C++ L + L + L+ AAL HD+DHPGVNN L + LA+ Y
Sbjct 1556 HALQVVQVCYIILRNFGIMLVLNDLNKFILLFAALCHDIDHPGVNNCFLTISNSKLALKY 1615
Query 61 NDKAVLENHHAAFATSAMMKL-GLFSRKT------KNVRKSPCLPSSALSSGAPSDASLV 113
ND ++LENHH + S + K L RK KN R+ S LS+ +L+
Sbjct 1616 NDNSILENHHCNYIFSLLDKCQDLDIRKNFNDFEKKNFRR--IFIRSVLSTDMSYHNTLL 1673
Query 114 GDAQTFLTSSVFGAVSQQSEGEHDWADDEDDHTFYPSFAEVRRVLISCILATDMELFRHH 173
+ + F++++ + + + L D E ++
Sbjct 1674 SNLEEFISTNNNNNNNINNN--------------------NYYYCHNQNLIFDEEELNNN 1713
Query 174 HEAMRKRGQMKRTTGDLLNSDEDHALLVTCLIHCADISNPLLPERRNVQWASLIIQEFNA 233
+ ++ G++ + L D L+ L+H ADISNP+ P +W+SLI++EFN
Sbjct 1714 NINIKMLGEIDENS---LLIKMDKEFLIETLLHAADISNPITPFPICAKWSSLIVEEFNY 1770
Query 234 QVEMERHEGLPVTVFMDARTELLRTQSQIGFL 265
Q ++E GLP+T FMD + ++ + ++QIGFL
Sbjct 1771 QSKLESQFGLPITPFMDLKDDITKIEAQIGFL 1802
Lambda K H
0.321 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 83755957455
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40