bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_0734_orf1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
377628.YPN_2563 90.9 7e-17
> 377628.YPN_2563
Length=871
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 21/143 (14%)
Query 194 RPGEKFRDEYKPSDYTVDSVDLRFLLEETNTKVSATIVMQRVAGTPPTDLALNGDDLDLA 253
+P K+R +Y+ DYT+ +DL F L+ T V+A ++R GT T L LNG+DL L
Sbjct 4 QPQAKYRHDYRAPDYTITDIDLDFALDAQKTTVTAVSKVKR-QGTDVTPLILNGEDLTLI 62
Query 254 SLMVNGKQVKHIGDSNAVAEGEAGYRLGSDGSLIISKAVLPQKAGEPFTLQTEVSIHPKS 313
S+ V+G+ H YR D +L+I + LP FTL IHP +
Sbjct 63 SVSVDGQAWPH-------------YR-QQDNTLVIEQ--LPAD----FTLTIVNDIHPAT 102
Query 314 NLKLKGLYVSGSALVTQCEAEGY 336
N L+GLY+SG AL TQCEAEG+
Sbjct 103 NSALEGLYLSGEALCTQCEAEGF 125
Lambda K H
0.312 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 141041311029
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40