bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_0674_orf2
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
5833.PF11_0055 206 8e-52
> 5833.PF11_0055
Length=424
Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 111/271 (40%), Positives = 166/271 (61%), Gaps = 9/271 (3%)
Query 33 LLSLLPPFPHQGPKD--AEGLIKAVRSLIPSNVKSVANQKELDALIASTVQMPKALFFSD 90
L+ + P P KD E IK LIPS + + + + + ++ MPK L FS+
Sbjct 120 LIYPINPMPKFVFKDEITESNIKKYTYLIPSKIDIIKDTQSFNVFLSKHENMPKVLIFSN 179
Query 91 KLTKPSLLVKALSNAFKDKLAFVLLNRDQFPEAVKKYKVSSFPHLVVVRKDKKDEVYKGA 150
K KP+ ++ ALSN+F KL F +N + E V KY V + P +++++K+K + YKG
Sbjct 180 K-KKPNYVLNALSNSFNKKLMFAYINNEN-EELVAKYNVKNLPTILLLKKNKVVDTYKGK 237
Query 151 FELQKLFDWLNVFSETFVMGGGFSDTAPAAEFDPELQPWKVESIPELTKQSSQHVCFKKS 210
+FDWLNV+SETFV+GGGF D +P + +PWK E IP+ TK S +CFKK+
Sbjct 238 QNYINIFDWLNVYSETFVLGGGF-DISPDKTNE---KPWKFELIPKFTKLSHGDICFKKA 293
Query 211 NKFVCVMLAKRGRELAPEELEVMESLKEDYEGH-DGKGPDFRFMWIDLATEKEWAELFDI 269
+K +C++ K G +L E++++ SLKE ++ H DG+G +FRFMWID+A E + L +
Sbjct 294 DKGLCLIYLKEGEKLEKSEIDMLLSLKEKFKPHIDGRGINFRFMWIDIAMETHFRSLLEF 353
Query 270 TNTPSVVAINPHKKVRFLKLDGDLPATKPHI 300
PSVV NP+K++R+ KL+ DL ATK +I
Sbjct 354 KKYPSVVVFNPYKRIRYAKLNEDLTATKENI 384
Lambda K H
0.318 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 103813419437
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40