bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0460_orf3 Length=189 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0242 231 1e-59 > 5833.PF11_0242 Length=2265 Score = 231 bits (588), Expect = 1e-59, Method: Composition-based stats. Identities = 108/188 (57%), Positives = 141/188 (75%), Gaps = 0/188 (0%) Query 2 SRFYVLIDNMLYYYKKKGDAKPRGFMFLEGCFVETIPDAGALRPHGIAIVHPRGDSVARR 61 +R+Y+L DN+LYYY KK + KPRGFMFLEGC+VE I + +G +I H V +R Sbjct 1732 ARYYILFDNLLYYYDKKRNLKPRGFMFLEGCYVELIAKNDNINKYGFSICHKGTKQVQKR 1791 Query 62 VLYAQSAQEQQQWVDALRASTRQQSLEHFYEVHEQLGQGKFSVVYRGVHKKTGEEVAIKV 121 LY + +E+ +WV AL +ST+Q +L + YE+HEQLGQGKFS VYRG++K+T E AIKV Sbjct 1792 NLYVNTLEERDEWVQALYSSTKQNTLYNLYELHEQLGQGKFSTVYRGINKQTNSEFAIKV 1851 Query 122 IDKGKINRHEKELLRSEMVILRLLNHPNVIRLKEMVDTKETLYIVMELVRGGELFDLIHA 181 IDK ++ +EKELLRSE+ ILRLL HPNVI LKE+++TKETLYI MELV+GGEL+D + A Sbjct 1852 IDKRSVSIYEKELLRSEISILRLLRHPNVIYLKEIINTKETLYISMELVKGGELYDFLLA 1911 Query 182 NHHLPEVH 189 L E+H Sbjct 1912 ETRLSEIH 1919 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 41818451300 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40