bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0437_orf3 Length=217 Score E Sequences producing significant alignments: (Bits) Value 5207.CNE04440 75.5 1e-12 > 5207.CNE04440 Length=416 Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 11/136 (8%) Query 75 FLLLLLTFFSNAVLKKRFCMKKQ---GDEAVLDKTIGTEIYWKEGMDLTSSVKITKQRNV 131 F+ FF +A L K + ++Q G + V DK IGTEI WKE DLT V+I KQRN Sbjct 238 FVFTANEFFEDAELTKTYYYQEQVGYGGDFVYDKAIGTEIKWKEEKDLTKKVEIKKQRNK 297 Query 132 RTNEVRIIKKKEKKNSFFNFFTDSSVPQREEIDTMKDSEV-----RLMPRKLSREYDIAV 186 T R I+K +SFFNFF PQ DT++ S++ + +L +Y I Sbjct 298 TTGRTRTIRKVVPTDSFFNFF---KPPQPPTPDTLEASDIDEEELEELDSRLELDYQIGE 354 Query 187 GIRDIIVPQAINVYLG 202 ++ I+P+A++ + G Sbjct 355 DFKEKIIPRAVDYFTG 370 Lambda K H 0.334 0.149 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 57341003262 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40