bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0429_orf1 Length=161 Score E Sequences producing significant alignments: (Bits) Value 5833.PFI0540w 96.7 2e-19 > 5833.PFI0540w Length=1165 Score = 96.7 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 38/80 (47%), Positives = 63/80 (78%), Gaps = 0/80 (0%) Query 82 DEEGWMREKGKYLDLSYRVERDSSVSMKVRGKLPCALFKVLAILNESDLAGNWAPMFKYA 141 + EGW++E KYLDLS+RV++D+++S+ +R KLP + ++L+ILNE++L+ NWAP A Sbjct 881 NSEGWIKENDKYLDLSHRVDKDNNISVHIRAKLPYEVNRILSILNETELSVNWAPFLTSA 940 Query 142 EKVYNYTRASQLIRQVFDYP 161 +K+ N +RAS +I Q+++YP Sbjct 941 KKIKNLSRASAIITQLYEYP 960 Lambda K H 0.311 0.126 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26764363279 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40