bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0333_orf2 Length=162 Score E Sequences producing significant alignments: (Bits) Value 3702.AT3G05970.1 164 1e-39 > 3702.AT3G05970.1 Length=701 Score = 164 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 75/162 (46%), Positives = 103/162 (63%), Gaps = 4/162 (2%) Query 1 ELCVRGPTVFAGYFRNKTETEKAMDKDGWFRTGDVVALLPNGGVQIIDRKKNIFKLAQGE 60 E+CVRGP +F GY++++ +T++ +D+DGW TGD+ LP G ++IIDRKKNIFKLAQGE Sbjct 500 EICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGE 559 Query 61 YVAPEKIEAVYLHSRFVAQCFVFGFSSETSLVAVVVADPDQTLQWVRETRGAAAAEAHTF 120 Y+APEKIE VY +FV QCF++G S +SLVAVV DPD W + + Sbjct 560 YIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPDVLKSWA----ASEGIKGGDL 615 Query 121 AEWLEDPEVQRVIQEDMQQVAKKQGLKGFELARKVYFRAEQF 162 E +P V+ + DM V ++ L+GFE A+ V E F Sbjct 616 RELCNNPRVKAAVLSDMDTVGREAQLRGFEFAKAVTLVLEPF 657 Lambda K H 0.321 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 27386790332 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40