bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: eggV2
2,483,276 sequences; 915,453,621 total letters
Query= Eace_0289_orf1
Length=143
Score E
Sequences producing significant alignments: (Bits) Value
5833.PFF0290w 76.3 3e-13
> 5833.PFF0290w
Length=293
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 63/107 (58%), Gaps = 0/107 (0%)
Query 13 YLHLLGERECGYDGEIYYVVALNALVHVVMYAYYFMASLNSPLARTIKIFVTQLQMAQFL 72
+L + GYDG+IYY++ +N+ VH VMY YY+++S+ + K VT LQM QFL
Sbjct 181 FLIMWVNTSVGYDGDIYYIIVVNSFVHFVMYLYYYLSSVKFKVPIFAKACVTYLQMLQFL 240
Query 73 SMTAHACYHVYFYKSCRYPVRVTIGYFFYVLSLFLLFRNFSKKTYGK 119
S+ Y ++ C YP ++ F+Y +SL +LF NF+ TY K
Sbjct 241 SIILPGFYVLFVRHYCPYPRKLVGLSFYYCISLLILFGNFALHTYIK 287
Lambda K H
0.329 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 22654093455
Database: eggV2
Posted date: Dec 15, 2009 4:47 PM
Number of letters in database: 915,453,621
Number of sequences in database: 2,483,276
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40