bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0225_orf2 Length=349 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF1185w 372 1e-101 > 5833.PFF1185w Length=2719 Score = 372 bits (954), Expect = 1e-101, Method: Composition-based stats. Identities = 183/346 (52%), Positives = 237/346 (68%), Gaps = 35/346 (10%) Query 2 HAMQDRLAAKGLYDLYVTTYETVKSEEEFFVEQIPHWQCIVLDEAHRIKNASGAIRHSLD 61 HA +DRLA KGLYDLYVTTYETVK+EEEFFVE IP WQCIVLDEAHRIKN SGAIRHS+D Sbjct 425 HAKEDRLAEKGLYDLYVTTYETVKNEEEFFVETIPKWQCIVLDEAHRIKNQSGAIRHSMD 484 Query 62 RVQGNMRLLLTGTPLQNNAQELFTLINFLMPDVFRDSLVIEQAFAQNAKSAAGKSGSKQP 121 RV GNMRLLLTGTPLQNN+ ELFTLINF+ PD+F++S +IEQAF +++ KS + Sbjct 485 RVVGNMRLLLTGTPLQNNSAELFTLINFMFPDIFKNSEIIEQAFMNASQNNKNKSNNNNN 544 Query 122 RGRSKAAA-----------------------------LAEMDVDTMFKQEDLNKIRQLLD 152 + +D+ + K+EDL IR LLD Sbjct 545 NNNKDEKNNNNDDDDDGGGGGGGANTSGNNTSKVNVNIGNIDLKSAIKEEDLKSIRCLLD 604 Query 153 RVMLRRLKEQAIALPRKVFHDIWLPISDLSAKWYRRLLEIKSLQEEARSNSARVNFRKML 212 ++MLRRLKEQAI LP+K+FHD+WLP+ LSA WY+RLL+I+S+ EE +V+ +K+L Sbjct 605 KIMLRRLKEQAITLPKKIFHDVWLPLGTLSAHWYKRLLDIRSMVEE------KVSVKKLL 658 Query 213 GLVIKMRILCAHPKGVCARESQLQRLQAFFSQEDPALQEEVTKAARELQAVEGAAHLAGS 272 GLVIKMRI+C HPKG+ +R SQ+++L AFF +E ++E+V A +L+ + G H+ S Sbjct 659 GLVIKMRIICGHPKGIVSRPSQMEKLFAFFEEESEDIKEQVKNDALKLKNISGEEHIESS 718 Query 273 SKLLFLDKLMCHLHFLNCKYVPAYERDYMAHKNDAATYEFYKRHEE 318 SKL+F+DKL+C LH+ NCKYV Y Y HK + A Y ++K E+ Sbjct 719 SKLIFIDKLLCQLHYENCKYVKNYASSYEKHKKEVAAYNYHKIQEQ 764 Lambda K H 0.322 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 130924423740 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40