bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0220_orf2 Length=142 Score E Sequences producing significant alignments: (Bits) Value 5833.PF11_0139 149 2e-35 > 5833.PF11_0139 Length=218 Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/139 (51%), Positives = 94/139 (67%), Gaps = 0/139 (0%) Query 4 VLNVPTLIESRGVKCLILDAPTNENLQAYLAQLVQVGVTDLVRTCPPTYDEGPVIGAGIR 63 VLN PT IE +K LILDAPTN+ L Y+ ++ VTDLVRTC TY++G + AGI Sbjct 57 VLNHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYNDGEIQDAGIN 116 Query 64 VHDLTFPDGEAPPAEVIARWRALAAQAQAEGGVLAVHCVAGLGRGPVLVAVSLIDSGFEA 123 VH+L FPDG+AP ++++ W + +AVHCVAGLGR PVL ++ LI+ G + Sbjct 117 VHELIFPDGDAPTEDIVSNWLNIVNNVIKNNCAVAVHCVAGLGRAPVLASIVLIEFGMDP 176 Query 124 EEAVNFIRSRRKGAINRRQ 142 +A+ FIR RRKGAIN+RQ Sbjct 177 IDAIVFIRDRRKGAINKRQ 195 Lambda K H 0.320 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22741008115 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40