bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0159_orf4 Length=289 Score E Sequences producing significant alignments: (Bits) Value 5833.PFF0940c 541 1e-152 > 5833.PFF0940c Length=806 Score = 541 bits (1393), Expect = 1e-152, Method: Compositional matrix adjust. Identities = 256/289 (88%), Positives = 274/289 (94%), Gaps = 0/289 (0%) Query 1 KGRGQVVVIGATNRQNSIDPALRRFGRFDREIDIGVPDDNGRLEILRIHTRNMKLGPDVR 60 K RGQVVVI ATNRQNSIDPALRRFGRFDREIDIGVPDDNGR EILRIHT+NMKL PDV+ Sbjct 317 KSRGQVVVIAATNRQNSIDPALRRFGRFDREIDIGVPDDNGRFEILRIHTKNMKLSPDVK 376 Query 61 LEELASSTHGFVGADLAQLCTEAALSCIREKMDLIDLEDDTIDAQVLSSMAVTQEHFSSA 120 LEELAS+THGFVGADLAQLCTEAAL+CIREKMD+IDLED+ ID +VL SM VTQ+HF+ A Sbjct 377 LEELASNTHGFVGADLAQLCTEAALTCIREKMDVIDLEDEIIDKEVLESMCVTQDHFNMA 436 Query 121 LQSCNPSSLRETVVEVPNVKWDDIGGLEEVKRNLQEMILYPIDHPEKFEKFGMSPSRGVL 180 L +CNPSSLRETVVEVPNVKWDDIGGL+EVK L+EMILYPIDHP+KFEKFGMSPSRGVL Sbjct 437 LGTCNPSSLRETVVEVPNVKWDDIGGLDEVKSTLREMILYPIDHPDKFEKFGMSPSRGVL 496 Query 181 FYGPPGCGKTLLAKAVASECSANFISIKGPELLTMWFGESEANVREVFDKARAASPCVLF 240 FYGPPGCGKTLLAKAVASECSANF+SIKGPELLTMWFGESEANVREVFDKARAA+PCVLF Sbjct 497 FYGPPGCGKTLLAKAVASECSANFVSIKGPELLTMWFGESEANVREVFDKARAAAPCVLF 556 Query 241 FDELDSIGTQRGNNLGDAGGAGDRVMNQLLTEIDGVGPMKNLFFVGATN 289 FDELDSIGTQRG++LGD GAGDRVMNQLLTEIDGVGP KNLFF+GATN Sbjct 557 FDELDSIGTQRGSSLGDGSGAGDRVMNQLLTEIDGVGPKKNLFFIGATN 605 Lambda K H 0.318 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 97212566178 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40