bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0047_orf1 Length=160 Score E Sequences producing significant alignments: (Bits) Value 5833.PF13_0233 181 7e-45 > 5833.PF13_0233 Length=818 Score = 181 bits (459), Expect = 7e-45, Method: Composition-based stats. Identities = 76/126 (60%), Positives = 98/126 (77%), Gaps = 0/126 (0%) Query 2 KKVSDVHAFDQSGVVFKGFQIWTDLAPAVQQQPNLMFAKCVVQPGSTPEVLQVQQVEPAG 61 ++VS+V AFD+SG VFKG+QIWTD++P ++ PN+MF KCVVQ GS E L V Q++P G Sbjct 16 RRVSNVEAFDKSGSVFKGYQIWTDISPTIENDPNIMFVKCVVQQGSKKEKLTVVQIDPPG 75 Query 62 DNDVFAVPHAHAWNVNSPIDPMTYGDIGMLPHTNIPCVLDFLRFRYMRNQIYTCADPLVV 121 + + HAWN NS +DPM++GDIG+L HTNIPCVLDFL+ RY++NQIYT A PL+V Sbjct 76 TGTPYDIDPTHAWNCNSQVDPMSFGDIGLLNHTNIPCVLDFLKHRYLKNQIYTTAVPLIV 135 Query 122 AINPLK 127 AINP K Sbjct 136 AINPYK 141 Lambda K H 0.321 0.136 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 26871144147 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40