bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: eggV2 2,483,276 sequences; 915,453,621 total letters Query= Eace_0012_orf1 Length=140 Score E Sequences producing significant alignments: (Bits) Value 5833.PF14_0143 93.6 1e-18 > 5833.PF14_0143 Length=2770 Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats. Identities = 40/96 (41%), Positives = 68/96 (70%), Gaps = 1/96 (1%) Query 23 VSVLELIRTKPHVMDPLIYDSHRIVHQLIPPSNCRCTARALARFYAALGEGQIISKPLLD 82 +S+ +L+++KP+++DPLIYDS +I+ + IP N R TA+AL + +A + +++ Sbjct 2567 ISLFQLMQSKPYILDPLIYDSKKILDKFIP-INGRFTAKALCKLFAFVNNEFFFPSYIIN 2625 Query 83 AARVAHTVDPTLEALLLTGGGSRTWGLGYQLYDCVY 118 R +T+D ++EAL+LTG SRTWG+G+QL++C Y Sbjct 2626 KIRKKYTIDKSVEALILTGAMSRTWGMGFQLFECEY 2661 Lambda K H 0.319 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 22914837435 Database: eggV2 Posted date: Dec 15, 2009 4:47 PM Number of letters in database: 915,453,621 Number of sequences in database: 2,483,276 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40