BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_8591_orf1
(132 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|196002721|ref|XP_002111228.1| hypothetical protein TRIADDRAFT... 35 4.8
gi|13236678|gb|AAK16196.1| AfaA [Escherichia coli] >gi|291291770... 34 6.6
gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein... 34 7.7
>gi|196002721|ref|XP_002111228.1| hypothetical protein TRIADDRAFT_10225 [Trichoplax adhaerens]
gi|190587179|gb|EDV27232.1| hypothetical protein TRIADDRAFT_10225 [Trichoplax adhaerens]
Length = 1266
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 32 ILNRAELNSDSVWVVGCGPLKIVGSLQ-------NSITVGSARSEESS--CTAASKSNKN 82
+LNRA D + V+ G + +GS + N + + E+S+ C + + N
Sbjct: 576 LLNRA----DKIIVISNGTIAAMGSYKSLLQSSRNFVELLPPSDEDSNNKCAESDGYDSN 631
Query: 83 LRSPYQKIRKNLNTPICSCVPHATAGLHREQREEGSSKLRRRIQYVVS 130
K +L+ S + +A + +E+R+EGS ++ IQY VS
Sbjct: 632 SYLGVTKSYSSLSIASASMIFNADVKMDQEERQEGSVTMKTYIQYFVS 679
>gi|13236678|gb|AAK16196.1| AfaA [Escherichia coli]
gi|291291770|gb|ADD91741.1| putative transcriptional regulator AfaA-VIII [Escherichia coli]
gi|299929320|gb|ADJ58044.1| AfaA [Escherichia coli]
Length = 127
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 17 NQVLKNEIC---TLSSSWILNRAELNSDSVWVV----GCGPLKIVGSLQNSITVGSARSE 69
N V+ +E+C S IL E++ W++ G K++ +L+ + +G R E
Sbjct: 11 NGVMNSEVCLHLVKERSGILLPGEVSERHFWLLIEISGMHSEKVINALREHLVMGYTRRE 70
Query: 70 ESSCTAASKSNKNLRSPYQKIRKNLNTPICSCVPHATAGLHREQREEGSSKLRR 123
+C S L +I ++L+ + + +P+ +GL EEG ++R
Sbjct: 71 --ACEQHGVSQGYLSGALVRI-QHLSQTVNNLLPYYVSGLAMNHEEEGDRSVKR 121
>gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
gi|332697524|gb|AEE91981.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1]
Length = 361
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 19 VLKNEICTLSSSWILNRAELNSDSVWVVGCGPLKIVGSLQNSITVGSARSEESSCTAASK 78
VLKN+ L+ +I N +E + +V+ KI S+ I + S +S+ +C AA K
Sbjct: 127 VLKNKASKLNEVFIKNISE---QTPFVIA----KIAQSVDGKIALSSGKSKWITCDAARK 179
Query: 79 SNKNLRSPYQKIRKNLNT-----PICSC 101
+RS Y I + T PI C
Sbjct: 180 KGHEIRSMYDAILVGIGTVLADDPILDC 207
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.314 0.127 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,256,473,373
Number of extensions: 41355932
Number of successful extensions: 101140
Number of sequences better than 10.0: 6
Number of HSP's gapped: 101987
Number of HSP's successfully gapped: 6
Length of query: 132
Length of database: 5,058,227,080
Length adjustment: 97
Effective length of query: 35
Effective length of database: 3,624,787,076
Effective search space: 126867547660
Effective search space used: 126867547660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)