BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_8040_orf1
         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|261338083|ref|ZP_05965967.1| lysine--tRNA ligase [Bifidobacte...    36     2.1  
gi|262368637|ref|ZP_06061966.1| predicted protein [Acinetobacter...    35     2.4  

>gi|261338083|ref|ZP_05965967.1| lysine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
 gi|270276700|gb|EFA22554.1| lysine--tRNA ligase [Bifidobacterium gallicum DSM 20093]
          Length = 930

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 46  AADIAEFLCITGGETLKWPSFLAGADTYLQPQRGVPVAQRAENGADNLTRSNPCGNTRQ 104
           A D+AE L   GGE++ + +   G D +L P R   VA  A NG   LT + P G+  +
Sbjct: 575 ARDLAESLVEQGGESMSFMTTWEGNDYWLSPTRRSAVAYHALNGI-ALTCTGPFGDPEE 632


>gi|262368637|ref|ZP_06061966.1| predicted protein [Acinetobacter johnsonii SH046]
 gi|262316315|gb|EEY97353.1| predicted protein [Acinetobacter johnsonii SH046]
          Length = 112

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 15/87 (17%)

Query: 18 FFSGSSLCKKHEKQLLDVEGTV------CTEGWLAADIAEFLCITGGETLKW---PSFLA 68
          FF+ +S   KH+KQ+   E T+       T GWL   I+ F+C+T G    W    S+  
Sbjct: 15 FFALASSMSKHQKQIFAKELTLQQTRLATTVGWLLLIISLFICLTQGH---WSTEISYWV 71

Query: 69 GADTYLQPQRGVPVA---QRAENGADN 92
          G  T+     GV ++   Q+ +N A +
Sbjct: 72 GVITFAALFVGVCLSYFEQKIKNIAVS 98


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.314    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,627,854,788
Number of extensions: 67029794
Number of successful extensions: 103204
Number of sequences better than 10.0: 7
Number of HSP's gapped: 104968
Number of HSP's successfully gapped: 7
Length of query: 153
Length of database: 5,058,227,080
Length adjustment: 116
Effective length of query: 37
Effective length of database: 3,344,010,168
Effective search space: 123728376216
Effective search space used: 123728376216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.9 bits)