BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_8005_orf1
         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325115170|emb|CBZ50726.1| putative ribosome biogenesis protei...    36     2.2  
gi|237844727|ref|XP_002371661.1| ribosome biogenesis protein BOP...    34     6.6  
gi|221501810|gb|EEE27566.1| WD domain, G-beta repeat containing ...    34     6.8  

>gi|325115170|emb|CBZ50726.1| putative ribosome biogenesis protein BOP1 [Neospora caninum
           Liverpool]
          Length = 1343

 Score = 35.8 bits (81), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 32/64 (50%)

Query: 22  SSDGCLRVFEVKTGRIAAAVLLQQQITAAAFHPRXXXXXXXXXXXXXXFVLDQPAFDDSS 81
            +D  L V EV TG+   +  LQ Q+TA AFHPR               VLD P FD  S
Sbjct: 895 GADNTLHVLEVLTGKRFLSFRLQAQVTALAFHPRLPILAAAIEDQLLLTVLDLPLFDQKS 954

Query: 82  LQQL 85
           ++QL
Sbjct: 955 VEQL 958


>gi|237844727|ref|XP_002371661.1| ribosome biogenesis protein BOP1, putative [Toxoplasma gondii ME49]
 gi|211969325|gb|EEB04521.1| ribosome biogenesis protein BOP1, putative [Toxoplasma gondii ME49]
 gi|221480934|gb|EEE19351.1| WD domain, G-beta repeat containing protein, putative [Toxoplasma
           gondii GT1]
          Length = 1035

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 23  SDGCLRVFEVKTGRIAAAVLLQQQITAAAFHPR 55
           +D  LRV E+ TG+   +  LQQ +TA AFHPR
Sbjct: 585 ADQTLRVVELLTGKQFLSFRLQQPVTALAFHPR 617


>gi|221501810|gb|EEE27566.1| WD domain, G-beta repeat containing protein, putative [Toxoplasma
           gondii VEG]
          Length = 1032

 Score = 34.3 bits (77), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 22  SSDGCLRVFEVKTGRIAAAVLLQQQITAAAFHPR 55
            +D  LRV E+ TG+   +  LQQ +TA AFHPR
Sbjct: 581 GADQTLRVVELLTGKQFLSFRLQQPVTALAFHPR 614


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.323    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 409,619,086
Number of extensions: 7193446
Number of successful extensions: 13356
Number of sequences better than 10.0: 3
Number of HSP's gapped: 13369
Number of HSP's successfully gapped: 3
Length of query: 123
Length of database: 5,058,227,080
Length adjustment: 89
Effective length of query: 34
Effective length of database: 3,743,008,932
Effective search space: 127262303688
Effective search space used: 127262303688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 76 (33.9 bits)