BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_7659_orf1
(194 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|229591292|ref|YP_002873411.1| hypothetical protein PFLU3857 [... 38 0.60
gi|171058246|ref|YP_001790595.1| metallophosphoesterase [Leptoth... 37 2.1
gi|118575855|ref|YP_875598.1| hypothetical protein CENSYa_0661 [... 35 4.1
>gi|229591292|ref|YP_002873411.1| hypothetical protein PFLU3857 [Pseudomonas fluorescens SBW25]
gi|229363158|emb|CAY50200.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 300
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 29 VSRFLRAGRTLE--AALSSAKRQLGQLRPR-RCCSPTARSMEADETR-RIAPAGACLRFS 84
+ ++L +G L +L+SA+R ++ P SP ADE R+AP G R
Sbjct: 188 LEQWLNSGHGLAFPESLASARRDRSEVAPTGLLLSPVRLQHLADEIESRLAPHGTWRRRL 247
Query: 85 CGVAAAPPH--VRACLCKNDTRRAVS----AEVLEPAKPSGRPAWRSEGT 128
C A A P VR L KN R+ + A + +P KP+ P W +E T
Sbjct: 248 CDWAIAHPQSGVRRLL-KNRVRKLLGFQRLAYIWQPLKPTAEPTWLAEFT 296
>gi|171058246|ref|YP_001790595.1| metallophosphoesterase [Leptothrix cholodnii SP-6]
gi|170775691|gb|ACB33830.1| metallophosphoesterase [Leptothrix cholodnii SP-6]
Length = 430
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 13/135 (9%)
Query: 16 CWRNVVSLRLSPQVSRFLRAGRTLEAALSSAKR------QLGQLR----PRRCCSPTARS 65
+ N+V ++ QV + AG + Q+G+L+ P
Sbjct: 47 AFDNLVGEAIAEQVDFMVIAGDLYDGGWKDFNTGIFFVAQMGRLKAAGIPVYLLLGN-HD 105
Query: 66 MEADETRRIAPAGACLRFSCGVAAA--PPHVRACLCKNDTRRAVSAEVLEPAKPSGRPAW 123
E++ T+R+A RF G AA P +R L + A + E L P P W
Sbjct: 106 AESEMTKRLALPDNVHRFPVGKAATFRLPELRVALHGRSFKEAATTENLALTYPDPVPGW 165
Query: 124 RSEGTVSSQLEGTSS 138
+ G + + LEG S+
Sbjct: 166 LNIGVLHTALEGNSA 180
>gi|118575855|ref|YP_875598.1| hypothetical protein CENSYa_0661 [Cenarchaeum symbiosum A]
gi|118194376|gb|ABK77294.1| hypothetical protein CENSYa_0661 [Cenarchaeum symbiosum A]
Length = 132
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 1 STVSPRTRTVSNCLFCWRNVVSLRLSPQVSRFLR----------AGRTLEAALSSAKRQL 50
S ++PR T+S+C+F + +R SP S F AGR++ + S Q+
Sbjct: 46 SALAPRVSTISSCIFFVKYCSDMRASPLASSFTEVSTYSLTLPSAGRSMFFSAQSPSLQI 105
Query: 51 GQLRP 55
G+LRP
Sbjct: 106 GRLRP 110
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.321 0.128 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,358,226,768
Number of extensions: 44066680
Number of successful extensions: 115295
Number of sequences better than 10.0: 24
Number of HSP's gapped: 116435
Number of HSP's successfully gapped: 24
Length of query: 194
Length of database: 5,058,227,080
Length adjustment: 132
Effective length of query: 62
Effective length of database: 3,107,566,456
Effective search space: 192669120272
Effective search space used: 192669120272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)