BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_7096_orf1
(158 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|325120168|emb|CBZ55722.1| conserved hypothetical protein [Neo... 44 0.007
gi|221502990|gb|EEE28700.1| conserved hypothetical protein [Toxo... 39 0.19
gi|237842735|ref|XP_002370665.1| hypothetical protein TGME49_018... 39 0.20
gi|221485636|gb|EEE23917.1| conserved hypothetical protein [Toxo... 39 0.20
gi|239931716|ref|ZP_04688669.1| 2-oxoacid dehydrogenase subunit ... 37 1.2
gi|297199165|ref|ZP_06916562.1| pyruvate dehydrogenase (acetyl-t... 36 1.9
gi|290961060|ref|YP_003492242.1| oxoglutarate dehydrogenase (suc... 36 2.3
gi|302561032|ref|ZP_07313374.1| pyruvate dehydrogenase (acetyl-t... 35 2.7
gi|336410484|ref|ZP_08590961.1| hypothetical protein HMPREF1018_... 35 2.9
gi|301164628|emb|CBW24187.1| putative glycosyl hydrolase [Bacter... 35 2.9
gi|253566316|ref|ZP_04843770.1| beta-galactosidase [Bacteroides ... 35 2.9
gi|60683116|ref|YP_213260.1| putative glycosyl hydrolase [Bacter... 35 2.9
gi|53715181|ref|YP_101173.1| beta-galactosidase [Bacteroides fra... 35 2.9
gi|265767009|ref|ZP_06094838.1| beta-galactosidase [Bacteroides ... 35 3.0
gi|14279184|gb|AAK58522.1|AF263100_1 putative AUX1-like permease... 35 3.1
gi|255011305|ref|ZP_05283431.1| beta-galactosidase precursor [Ba... 35 3.4
gi|329941045|ref|ZP_08290325.1| 2-oxoacid dehydrogenase subunit ... 35 3.4
gi|256826345|ref|YP_003150305.1| multidrug ABC transporter ATPas... 35 4.3
gi|21220657|ref|NP_626436.1| 2-oxoacid dehydrogenase subunit E1 ... 35 4.9
>gi|325120168|emb|CBZ55722.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 779
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 11/158 (6%)
Query: 1 STQYPDENDESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQMRNAVLLCKQKLQLL 60
+ YP E+D +W+ + K S ++ D + K M+NA+ QK ++L
Sbjct: 577 TATYPAEDDPFLTEWLASYNSGKDSGHPSSRVADARAK-------MKNAIWWSVQKHKVL 629
Query: 61 DEIMPCYRY-SSDGQTKRGNCTGDEMFG-QPKLGSWN-IIEQSSYYLTVSSRSFNQTIQF 117
C+ Y ++ G+ +C G +F P S N +I +S + + +
Sbjct: 630 SAKYSCFFYDAATGKVVEQSCPGSTVFAYSPDDWSKNSLISSASAMVQWIKKLLLRVENS 689
Query: 118 ASSHTIDYVNALFALMQKVLKNLSDALSCSFVREGMIQ 155
+ T LF++++KV K L D ++C F+R +Q
Sbjct: 690 IPTATESATEILFSIIRKV-KALVDGINCKFMRRAFVQ 726
>gi|221502990|gb|EEE28700.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 934
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 30/167 (17%)
Query: 1 STQYPDENDESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQMRNAVLLCKQKLQLL 60
+ YPDEND +W++ + + + + D +T QM+NA+ QK ++L
Sbjct: 756 TATYPDENDPFLAEWLQSYSPGRSGKEIPG-NVDART-------QMKNAIWWSVQKHKVL 807
Query: 61 DEIMPCYRY-SSDGQTKRGNCTGDEMFG-QPKLGSW----------NIIEQSSYYLTVSS 108
C Y +++G+ C G +F P W +IEQ L
Sbjct: 808 SATYDCPYYDAAEGKLVGRKCPGSTVFAYSPD--DWSKSSIVSSSAEMIEQIKRLLQRVK 865
Query: 109 RSFNQTIQFASSHTIDYVNALFALMQKVLKNLSDALSCSFVREGMIQ 155
S + T + LF++++KV ++ + ++C F+R +Q
Sbjct: 866 NSI-------PTGTASATDILFSVIEKV-TSMVEGINCKFMRRAFVQ 904
>gi|237842735|ref|XP_002370665.1| hypothetical protein TGME49_018910 [Toxoplasma gondii ME49]
gi|211968329|gb|EEB03525.1| hypothetical protein TGME49_018910 [Toxoplasma gondii ME49]
Length = 934
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 30/167 (17%)
Query: 1 STQYPDENDESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQMRNAVLLCKQKLQLL 60
+ YPDEND +W++ + + + + D +T QM+NA+ QK ++L
Sbjct: 756 TATYPDENDPFLTEWLQSYSPGRSGKEIPG-NVDART-------QMKNAIWWSVQKHKVL 807
Query: 61 DEIMPCYRY-SSDGQTKRGNCTGDEMFG-QPKLGSW----------NIIEQSSYYLTVSS 108
C Y +++G+ C G +F P W +IEQ L
Sbjct: 808 SATYDCPYYDAAEGKLVGRKCPGSTVFAYSPD--DWSKSSIVSSSAEMIEQIKRLLQRVK 865
Query: 109 RSFNQTIQFASSHTIDYVNALFALMQKVLKNLSDALSCSFVREGMIQ 155
S + T + LF++++KV ++ + ++C F+R +Q
Sbjct: 866 NSI-------PTGTASATDILFSVIEKV-TSMVEGINCKFMRRAFVQ 904
>gi|221485636|gb|EEE23917.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 934
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 30/167 (17%)
Query: 1 STQYPDENDESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQMRNAVLLCKQKLQLL 60
+ YPDEND +W++ + + + + D +T QM+NA+ QK ++L
Sbjct: 756 TATYPDENDPFLAEWLQSYSPGRSGKEIPG-NVDART-------QMKNAIWWSVQKHKVL 807
Query: 61 DEIMPCYRY-SSDGQTKRGNCTGDEMFG-QPKLGSW----------NIIEQSSYYLTVSS 108
C Y +++G+ C G +F P W +IEQ L
Sbjct: 808 SATYDCPYYDAAEGKLVGRKCPGSTVFAYSPD--DWSKSSIVSSSAEMIEQIKRLLQRVK 865
Query: 109 RSFNQTIQFASSHTIDYVNALFALMQKVLKNLSDALSCSFVREGMIQ 155
S + T + LF++++KV ++ + ++C F+R +Q
Sbjct: 866 NSI-------PTGTASATDILFSVIEKV-TSMVEGINCKFMRRAFVQ 904
>gi|239931716|ref|ZP_04688669.1| 2-oxoacid dehydrogenase subunit E1 [Streptomyces ghanaensis ATCC
14672]
gi|291440084|ref|ZP_06579474.1| 2-oxoacid dehydrogenase subunit E1 [Streptomyces ghanaensis ATCC
14672]
gi|291342979|gb|EFE69935.1| 2-oxoacid dehydrogenase subunit E1 [Streptomyces ghanaensis ATCC
14672]
Length = 900
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 9 DESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQ---MRNAVLLCKQKLQLLDEIMP 65
DE F+ G ++ E+ +A+ + YQT+ AAY ++ ++ L+ KL D+I+
Sbjct: 306 DELFRLDTTGALVRRLREVPDAQVQTYQTRDAAYIREDFFGKDPALVEMAKLLSDDKILE 365
Query: 66 CYRYSSDGQTKR 77
C+ +S G R
Sbjct: 366 CFHFSRGGHEPR 377
>gi|297199165|ref|ZP_06916562.1| pyruvate dehydrogenase (acetyl-transferring), homodimeric type
[Streptomyces sviceus ATCC 29083]
gi|197715115|gb|EDY59149.1| pyruvate dehydrogenase (acetyl-transferring), homodimeric type
[Streptomyces sviceus ATCC 29083]
Length = 900
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 9 DESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQ---MRNAVLLCKQKLQLLDEIMP 65
DE F+ G ++ E+ +A+ + YQT+ AAY +Q ++ L+ KL D+I+
Sbjct: 306 DELFQLDTTGALVRRLREVPDAQVQTYQTRDAAYIRQDFFGKDPALVEMAKLLSDDKILE 365
Query: 66 CYRYSSDGQTKR 77
C+ S G R
Sbjct: 366 CFHLSRGGHEAR 377
>gi|290961060|ref|YP_003492242.1| oxoglutarate dehydrogenase (succinyl-transferring) [Streptomyces
scabiei 87.22]
gi|260650586|emb|CBG73702.1| putative oxoglutarate dehydrogenase (succinyl-transferring)
[Streptomyces scabiei 87.22]
Length = 900
Score = 35.8 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 9 DESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQ---MRNAVLLCKQKLQLLDEIMP 65
DE F+ G ++ E+ +A+ + YQT+ AAY +Q ++ L+ KL D+I+
Sbjct: 306 DELFQLDTTGALVRRLREVPDAQVQTYQTRDAAYIRQDFFGKDPALVEMAKLLSDDKILE 365
Query: 66 CYRYSSDGQTKR 77
C+ S G R
Sbjct: 366 CFHLSRGGHEAR 377
>gi|302561032|ref|ZP_07313374.1| pyruvate dehydrogenase (acetyl-transferring), homodimeric type
[Streptomyces griseoflavus Tu4000]
gi|302478650|gb|EFL41743.1| pyruvate dehydrogenase (acetyl-transferring), homodimeric type
[Streptomyces griseoflavus Tu4000]
Length = 900
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 9 DESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQ---MRNAVLLCKQKLQLLDEIMP 65
DE F+ G ++ E+ +A+ + YQT+ AAY +Q ++ L KL D+I+
Sbjct: 306 DELFRLDTTGALVRRLREVPDAQVQTYQTRDAAYIRQDFFGKDPALAEMAKLLSDDKILE 365
Query: 66 CYRYSSDGQTKR 77
C+ S G R
Sbjct: 366 CFHLSRGGHESR 377
>gi|336410484|ref|ZP_08590961.1| hypothetical protein HMPREF1018_02978 [Bacteroides sp. 2_1_56FAA]
gi|335944314|gb|EGN06136.1| hypothetical protein HMPREF1018_02978 [Bacteroides sp. 2_1_56FAA]
Length = 769
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 9/44 (20%)
Query: 68 RYSSDGQTKRGNCTGDEMFGQPKLGSWNIIEQSSYYLTVSSRSF 111
RY+ +T+ GNCTGD++F +++S+Y++TV+ ++
Sbjct: 690 RYADSEETRSGNCTGDKVFD---------LQESTYWMTVAKDAY 724
>gi|301164628|emb|CBW24187.1| putative glycosyl hydrolase [Bacteroides fragilis 638R]
Length = 769
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 9/44 (20%)
Query: 68 RYSSDGQTKRGNCTGDEMFGQPKLGSWNIIEQSSYYLTVSSRSF 111
RY+ +T+ GNCTGD++F +++S+Y++TV+ ++
Sbjct: 690 RYADSEETRSGNCTGDKVFD---------LQESTYWMTVAKDAY 724
>gi|253566316|ref|ZP_04843770.1| beta-galactosidase [Bacteroides sp. 3_2_5]
gi|251945420|gb|EES85858.1| beta-galactosidase [Bacteroides sp. 3_2_5]
Length = 769
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 9/44 (20%)
Query: 68 RYSSDGQTKRGNCTGDEMFGQPKLGSWNIIEQSSYYLTVSSRSF 111
RY+ +T+ GNCTGD++F +++S+Y++TV+ ++
Sbjct: 690 RYADSEETRSGNCTGDKVFD---------LQESTYWMTVAKDAY 724
>gi|60683116|ref|YP_213260.1| putative glycosyl hydrolase [Bacteroides fragilis NCTC 9343]
gi|60494550|emb|CAH09349.1| putative glycosyl hydrolase [Bacteroides fragilis NCTC 9343]
Length = 769
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 9/44 (20%)
Query: 68 RYSSDGQTKRGNCTGDEMFGQPKLGSWNIIEQSSYYLTVSSRSF 111
RY+ +T+ GNCTGD++F +++S+Y++TV+ ++
Sbjct: 690 RYADSEETRSGNCTGDKVFD---------LQESTYWMTVAKDAY 724
>gi|53715181|ref|YP_101173.1| beta-galactosidase [Bacteroides fragilis YCH46]
gi|52218046|dbj|BAD50639.1| beta-galactosidase precursor [Bacteroides fragilis YCH46]
Length = 769
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 9/44 (20%)
Query: 68 RYSSDGQTKRGNCTGDEMFGQPKLGSWNIIEQSSYYLTVSSRSF 111
RY+ +T+ GNCTGD++F +++S+Y++TV+ ++
Sbjct: 690 RYADSEETRSGNCTGDKVFD---------LQESTYWMTVAKDAY 724
>gi|265767009|ref|ZP_06094838.1| beta-galactosidase [Bacteroides sp. 2_1_16]
gi|263253386|gb|EEZ24862.1| beta-galactosidase [Bacteroides sp. 2_1_16]
Length = 769
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 9/44 (20%)
Query: 68 RYSSDGQTKRGNCTGDEMFGQPKLGSWNIIEQSSYYLTVSSRSF 111
RY+ +T+ GNCTGD++F +++S+Y++TV+ ++
Sbjct: 690 RYADSEETRSGNCTGDKVFD---------LQESTYWMTVAKDAY 724
>gi|14279184|gb|AAK58522.1|AF263100_1 putative AUX1-like permease [Populus tremula x Populus tremuloides]
Length = 491
Score = 35.4 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 91 LGSWNIIEQSSYYLTVSSRSFNQTIQFASSHTIDYVNALFALMQKVLKNLSDALSCSFVR 150
LGSW S Y+ +R + + F +H I + L L++K +N+ A +C+F+
Sbjct: 82 LGSWTAYLISVLYIEYRTRKEREKVDF-RNHVIQWFEVLDGLLEKYWRNVGLAFNCTFLL 140
Query: 151 EGMI 154
G +
Sbjct: 141 FGSV 144
>gi|255011305|ref|ZP_05283431.1| beta-galactosidase precursor [Bacteroides fragilis 3_1_12]
gi|313149116|ref|ZP_07811309.1| beta-galactosidase [Bacteroides fragilis 3_1_12]
gi|313137883|gb|EFR55243.1| beta-galactosidase [Bacteroides fragilis 3_1_12]
Length = 769
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 9/44 (20%)
Query: 68 RYSSDGQTKRGNCTGDEMFGQPKLGSWNIIEQSSYYLTVSSRSF 111
RY+ +T+ GNCTGD++F +++S+Y++TV+ ++
Sbjct: 690 RYADSEETRSGNCTGDKVFD---------LQESTYWMTVARDAY 724
>gi|329941045|ref|ZP_08290325.1| 2-oxoacid dehydrogenase subunit E1 [Streptomyces griseoaurantiacus
M045]
gi|329300339|gb|EGG44237.1| 2-oxoacid dehydrogenase subunit E1 [Streptomyces griseoaurantiacus
M045]
Length = 900
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 9 DESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQ---MRNAVLLCKQKLQLLDEIMP 65
DE F+ G ++ E+ +A+ + YQT+ AAY ++ ++ L+ KL D+I+
Sbjct: 306 DELFRVDTTGALVRRLREVPDAQVQTYQTRDAAYIREDFFGKDPALVEMAKLLSDDKILE 365
Query: 66 CYRYSSDGQTKR 77
C+ S G R
Sbjct: 366 CFHLSRGGHEAR 377
>gi|256826345|ref|YP_003150305.1| multidrug ABC transporter ATPase [Kytococcus sedentarius DSM 20547]
gi|256689738|gb|ACV07540.1| ABC-type multidrug transport system, ATPase component [Kytococcus
sedentarius DSM 20547]
Length = 312
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 18 GIQAKKQSELLEAKDKDYQTKSAAYAQQMRN-----AVLLCKQKLQLLDE 62
G+ A+++ ELLE D D + K AY++ R A L C +L LLDE
Sbjct: 112 GLDARRRDELLERFDLDPRKKGRAYSKGNRQKFPLVAALACDAELLLLDE 161
>gi|21220657|ref|NP_626436.1| 2-oxoacid dehydrogenase subunit E1 [Streptomyces coelicolor A3(2)]
gi|256788197|ref|ZP_05526628.1| 2-oxoacid dehydrogenase subunit E1 [Streptomyces lividans TK24]
gi|289772092|ref|ZP_06531470.1| pyruvate dehydrogenase subunit E1 [Streptomyces lividans TK24]
gi|5578865|emb|CAB51267.1| putative pyruvate dehydrogenase E1 component [Streptomyces
coelicolor A3(2)]
gi|289702291|gb|EFD69720.1| pyruvate dehydrogenase subunit E1 [Streptomyces lividans TK24]
Length = 899
Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 9 DESFKKWVKGIQAKKQSELLEAKDKDYQTKSAAYAQQ---MRNAVLLCKQKLQLLDEIMP 65
DE F+ G ++ E+ +A+ + YQT+ AAY ++ ++ L KL D+I+
Sbjct: 307 DELFQLDTTGALVRRLREVPDAQVQTYQTRDAAYIREDFFNKDPQLAEMAKLLSDDKILD 366
Query: 66 CYRYSSDGQTKR 77
C+ +S G R
Sbjct: 367 CFHFSRGGHESR 378
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.315 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,421,563,113
Number of extensions: 48962932
Number of successful extensions: 129909
Number of sequences better than 10.0: 27
Number of HSP's gapped: 131178
Number of HSP's successfully gapped: 27
Length of query: 158
Length of database: 5,058,227,080
Length adjustment: 120
Effective length of query: 38
Effective length of database: 3,284,899,240
Effective search space: 124826171120
Effective search space used: 124826171120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)