BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_6255_orf2
         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|282860145|ref|ZP_06269220.1| hypothetical protein HMPREF0648_...    36     1.7  
gi|255729628|ref|XP_002549739.1| conserved hypothetical protein ...    34     7.5  
gi|254424628|ref|ZP_05038346.1| nickel import ATP-binding protei...    34     7.5  

>gi|282860145|ref|ZP_06269220.1| hypothetical protein HMPREF0648_0732 [Prevotella bivia JCVIHMP010]
 gi|282587034|gb|EFB92264.1| hypothetical protein HMPREF0648_0732 [Prevotella bivia JCVIHMP010]
          Length = 367

 Score = 36.2 bits (82), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 37  GVIVRPDNRNRHIMTLSSFKAPTTSPEGPPARRRNLRSGEHSDLVTARTLSQTETEKGQI 96
           G+++ PD  N+    +S F AP  S  G      N  SG    ++    +    TEKG +
Sbjct: 241 GIVIFPDGMNKS-TAMSLFTAPNGSTFGKHTLDTNGPSGNKGKILKMEAV----TEKGCL 295

Query: 97  ERPFAGLKANHGKGE 111
             PFAG      KG+
Sbjct: 296 FLPFAGWNTGFNKGK 310


>gi|255729628|ref|XP_002549739.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
 gi|240132808|gb|EER32365.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
          Length = 3808

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 10   PYSDHDDLTRRSNGPLQDILEEPEHPPGVIVRPDNRNRHIMTLSSFKAPTTSPEGPPARR 69
            P  +HD+L  +++  L+DI EE     GV+  P + ++ ++  +S    T          
Sbjct: 2463 PLDEHDNLQMKASRSLKDITEE----HGVVAIPHDEHQDLIAKAS---KTLDDHAKEQGV 2515

Query: 70   RNLRSGEHSDLVT--ARTLSQTETEKGQIERPF 100
            + + +GE+ DLV+  +RT  +   E+G+I  P 
Sbjct: 2516 KIVATGEYDDLVSKASRTADKLAEEEGKIAIPL 2548


>gi|254424628|ref|ZP_05038346.1| nickel import ATP-binding protein NikD, putative [Synechococcus sp.
           PCC 7335]
 gi|196192117|gb|EDX87081.1| nickel import ATP-binding protein NikD, putative [Synechococcus sp.
           PCC 7335]
          Length = 638

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 22  NGPLQDILEEPEHP--PGVIV---RPDNRNRHIMTLSSFKAPTTSPEG 64
            G + DI + P+HP   G++    RPD R R + T+S +     SPEG
Sbjct: 275 TGAVLDIFKSPQHPYTQGLLACRPRPDQRLRQLPTVSDYMEEVVSPEG 322


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.309    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,383,581,275
Number of extensions: 56628765
Number of successful extensions: 103670
Number of sequences better than 10.0: 28
Number of HSP's gapped: 105656
Number of HSP's successfully gapped: 28
Length of query: 126
Length of database: 5,058,227,080
Length adjustment: 92
Effective length of query: 34
Effective length of database: 3,698,675,736
Effective search space: 125754975024
Effective search space used: 125754975024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 76 (33.9 bits)