BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_6147_orf2
(56 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|221508648|gb|EEE34217.1| 14-3-3 protein, putative [Toxoplasma... 39 0.22
gi|221488131|gb|EEE26345.1| 14-3-3 protein, putative [Toxoplasma... 39 0.22
gi|237832753|ref|XP_002365674.1| 14-3-3 protein, putative [Toxop... 39 0.23
gi|119486845|ref|ZP_01620820.1| methyl-accepting chemotaxis prot... 33 9.4
>gi|221508648|gb|EEE34217.1| 14-3-3 protein, putative [Toxoplasma gondii VEG]
Length = 452
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 3 TDIEDQVPLS-LKMGLVLNYAVLLHDEPDGAE--QAINALAAQFREAVENVVHISD 55
T+ +D++ ++ L +G+VLNY VLL G + +AI +AA FR +VEN+ H+ +
Sbjct: 365 TEQDDELKVTPLHLGIVLNYGVLLKSINQGQQTNRAIELIAAAFRYSVENMYHVRN 420
>gi|221488131|gb|EEE26345.1| 14-3-3 protein, putative [Toxoplasma gondii GT1]
Length = 452
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 3 TDIEDQVPLS-LKMGLVLNYAVLLHDEPDGAE--QAINALAAQFREAVENVVHISD 55
T+ +D++ ++ L +G+VLNY VLL G + +AI +AA FR +VEN+ H+ +
Sbjct: 365 TEQDDELKVTPLHLGIVLNYGVLLKSINQGQQTNRAIELIAAAFRYSVENMYHVRN 420
>gi|237832753|ref|XP_002365674.1| 14-3-3 protein, putative [Toxoplasma gondii ME49]
gi|211963338|gb|EEA98533.1| 14-3-3 protein, putative [Toxoplasma gondii ME49]
Length = 452
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 3 TDIEDQVPLS-LKMGLVLNYAVLLHDEPDGAE--QAINALAAQFREAVENVVHISD 55
T+ +D++ ++ L +G+VLNY VLL G + +AI +AA FR +VEN+ H+ +
Sbjct: 365 TEQDDELKVTPLHLGIVLNYGVLLKSINQGQQTNRAIELIAAAFRYSVENMYHVRN 420
>gi|119486845|ref|ZP_01620820.1| methyl-accepting chemotaxis protein [Lyngbya sp. PCC 8106]
gi|119456138|gb|EAW37271.1| methyl-accepting chemotaxis protein [Lyngbya sp. PCC 8106]
Length = 1291
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 1 SQTDIEDQVPLSLKMGLVLNYAVLLHDEPDGAEQA--INALAAQFREAV 47
S++DI L +++GL L+ A LL + D AEQA +N ++++ RE++
Sbjct: 554 SESDINFTKQLGIQVGLALDQASLLQKQQDAAEQARRLNIISSRIRESL 602
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.313 0.130 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 486,484,637
Number of extensions: 12410341
Number of successful extensions: 29778
Number of sequences better than 10.0: 4
Number of HSP's gapped: 29873
Number of HSP's successfully gapped: 4
Length of query: 56
Length of database: 5,058,227,080
Length adjustment: 29
Effective length of query: 27
Effective length of database: 4,629,672,852
Effective search space: 125001167004
Effective search space used: 125001167004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)