BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_5350_orf2
(51 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|37779122|gb|AAP20221.1| ubiquitin [Pagrus major] 43 0.019
gi|304445694|pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked ... 41 0.053
gi|463371|gb|AAA21456.1| ubiquitin [Elphidium clavatum] 41 0.062
gi|120613341|ref|YP_973019.1| ubiquitin [Acidovorax citrulli AAC... 41 0.070
gi|26353460|dbj|BAC40360.1| unnamed protein product [Mus musculus] 40 0.076
gi|328864943|gb|EGG13329.1| hypothetical protein DFA_11090 [Dict... 40 0.086
gi|332257497|ref|XP_003277840.1| PREDICTED: ubiquitin-60S riboso... 40 0.088
gi|109086730|ref|XP_001087600.1| PREDICTED: hypothetical protein... 40 0.089
gi|47027036|gb|AAT08733.1| ubiquitin fusion protein UBC [Hyacint... 40 0.096
gi|242045712|ref|XP_002460727.1| hypothetical protein SORBIDRAFT... 40 0.10
gi|172051100|gb|ACB70325.1| ubiquitin/40S ribosomal protein S27a... 40 0.11
gi|115479831|ref|NP_001063509.1| Os09g0483400 [Oryza sativa Japo... 40 0.11
gi|328790048|ref|XP_003251368.1| PREDICTED: ubiquitin-60S riboso... 40 0.13
gi|340500720|gb|EGR27580.1| ubiquitin, putative [Ichthyophthiriu... 40 0.13
gi|324518859|gb|ADY47224.1| Ubiquitin-60S ribosomal protein L40 ... 40 0.13
gi|324517584|gb|ADY46862.1| Ubiquitin-60S ribosomal protein L40 ... 40 0.13
gi|337263153|gb|AEI69279.1| ribosomal protein L40 [Oncorhynchus ... 40 0.14
gi|326430331|gb|EGD75901.1| ubiquitin/ribosomal protein CEP52 [S... 40 0.14
gi|326504848|dbj|BAK06715.1| predicted protein [Hordeum vulgare ... 40 0.14
gi|242050130|ref|XP_002462809.1| hypothetical protein SORBIDRAFT... 40 0.15
gi|332253686|ref|XP_003275965.1| PREDICTED: polyubiquitin-C-like... 40 0.15
gi|325096355|gb|EGC49665.1| ubiquitin [Ajellomyces capsulatus H88] 40 0.15
gi|328864214|gb|AEB53190.1| ubuiquitin/ribosomal L40 fusion prot... 40 0.15
gi|242074418|ref|XP_002447145.1| hypothetical protein SORBIDRAFT... 40 0.16
gi|328875773|gb|EGG24137.1| ubiquitin/ribosomal protein L40 fusi... 40 0.16
gi|336365182|gb|EGN93533.1| hypothetical protein SERLA73DRAFT_63... 40 0.16
gi|326532606|dbj|BAK05232.1| predicted protein [Hordeum vulgare ... 40 0.16
gi|324523172|gb|ADY48201.1| Ubiquitin-60S ribosomal protein L40 ... 40 0.16
gi|336111806|gb|AEI16563.1| poly ubiquitin [Chelon labrosus] 39 0.17
gi|332863200|ref|XP_003318055.1| PREDICTED: polyubiquitin-like [... 39 0.17
>gi|37779122|gb|AAP20221.1| ubiquitin [Pagrus major]
Length = 104
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 18 LLSTTLSDYTLQRSFVFFAGKQLDDGRTLSDYNI 51
L S T ++ + + FAGKQL+DGRTLSDYNI
Sbjct: 4 LRSRTRKEFPRDQQRLIFAGKQLEDGRTLSDYNI 37
>gi|304445694|pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 29 QRSFVFFAGKQLDDGRTLSDYNI 51
Q+ + FAGKQL+DGRTLSDYNI
Sbjct: 39 QQQRLIFAGKQLEDGRTLSDYNI 61
>gi|463371|gb|AAA21456.1| ubiquitin [Elphidium clavatum]
Length = 76
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 29 QRSFVFFAGKQLDDGRTLSDYNI 51
++ + FAGKQLDDGRTLSDYNI
Sbjct: 39 EQQRLIFAGKQLDDGRTLSDYNI 61
>gi|120613341|ref|YP_973019.1| ubiquitin [Acidovorax citrulli AAC00-1]
gi|120591805|gb|ABM35245.1| ubiquitin [Acidovorax citrulli AAC00-1]
Length = 287
Score = 40.8 bits (94), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 25 DYTLQRSFVFFAGKQLDDGRTLSDYNI 51
D +R + FAGKQL+DGRTLSDYNI
Sbjct: 74 DIPPERQRLIFAGKQLEDGRTLSDYNI 100
>gi|26353460|dbj|BAC40360.1| unnamed protein product [Mus musculus]
Length = 153
Score = 40.4 bits (93), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
V FAGKQL+DGRTLSDYNI
Sbjct: 43 VIFAGKQLEDGRTLSDYNI 61
Score = 39.3 bits (90), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 119 LIFAGKQLEDGRTLSDYNI 137
>gi|328864943|gb|EGG13329.1| hypothetical protein DFA_11090 [Dictyostelium fasciculatum]
Length = 356
Score = 40.4 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 14 GAVALLSTTLSDYTLQRSFVFFAGKQLDDGRTLSDYNI 51
G + + TL+ + + FAGKQL+DGRTLSDYNI
Sbjct: 227 GGMQIFVKTLTGIPPDQQRLIFAGKQLEDGRTLSDYNI 264
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 119 LIFAGKQLEDGRTLSDYNI 137
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 195 LIFAGKQLEDGRTLSDYNI 213
Score = 37.7 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 322 LIFAGKQLEDGRTLSDYNI 340
>gi|332257497|ref|XP_003277840.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Nomascus
leucogenys]
Length = 126
Score = 40.4 bits (93), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 30 RSFVFFAGKQLDDGRTLSDYNI 51
+ + FAGKQL+DGRTLSDYNI
Sbjct: 40 QQHLIFAGKQLEDGRTLSDYNI 61
>gi|109086730|ref|XP_001087600.1| PREDICTED: hypothetical protein LOC697620 [Macaca mulatta]
Length = 156
Score = 40.4 bits (93), Expect = 0.089, Method: Composition-based stats.
Identities = 19/24 (79%), Positives = 21/24 (87%), Gaps = 2/24 (8%)
Query: 28 LQRSFVFFAGKQLDDGRTLSDYNI 51
LQR + FAGKQL+DGRTLSDYNI
Sbjct: 40 LQR--LIFAGKQLEDGRTLSDYNI 61
>gi|47027036|gb|AAT08733.1| ubiquitin fusion protein UBC [Hyacinthus orientalis]
Length = 118
Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 25 DYTLQRSFVFFAGKQLDDGRTLSDYNI 51
D T + + FAGKQL+DGRTL+DYNI
Sbjct: 25 DSTRDQQRLIFAGKQLEDGRTLADYNI 51
>gi|242045712|ref|XP_002460727.1| hypothetical protein SORBIDRAFT_02g033880 [Sorghum bicolor]
gi|241924104|gb|EER97248.1| hypothetical protein SORBIDRAFT_02g033880 [Sorghum bicolor]
Length = 136
Score = 40.0 bits (92), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQLDDGRTL+DYNI
Sbjct: 43 LIFAGKQLDDGRTLADYNI 61
>gi|172051100|gb|ACB70325.1| ubiquitin/40S ribosomal protein S27a [Ornithodoros coriaceus]
Length = 149
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQLDDGRTLSDYNI
Sbjct: 36 LIFAGKQLDDGRTLSDYNI 54
>gi|115479831|ref|NP_001063509.1| Os09g0483400 [Oryza sativa Japonica Group]
gi|113631742|dbj|BAF25423.1| Os09g0483400 [Oryza sativa Japonica Group]
gi|218202353|gb|EEC84780.1| hypothetical protein OsI_31820 [Oryza sativa Indica Group]
gi|222641804|gb|EEE69936.1| hypothetical protein OsJ_29806 [Oryza sativa Japonica Group]
Length = 140
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQLDDGRTL+DYNI
Sbjct: 43 LIFAGKQLDDGRTLADYNI 61
>gi|328790048|ref|XP_003251368.1| PREDICTED: ubiquitin-60S ribosomal protein L40 isoform 3 [Apis
mellifera]
Length = 132
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 47 LIFAGKQLEDGRTLSDYNI 65
>gi|340500720|gb|EGR27580.1| ubiquitin, putative [Ichthyophthirius multifiliis]
gi|340501957|gb|EGR28684.1| ubiquitin, putative [Ichthyophthirius multifiliis]
gi|340503486|gb|EGR30070.1| ubiquitin, putative [Ichthyophthirius multifiliis]
Length = 129
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|324518859|gb|ADY47224.1| Ubiquitin-60S ribosomal protein L40 [Ascaris suum]
Length = 128
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|324517584|gb|ADY46862.1| Ubiquitin-60S ribosomal protein L40 [Ascaris suum]
Length = 124
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 39 LIFAGKQLEDGRTLSDYNI 57
>gi|337263153|gb|AEI69279.1| ribosomal protein L40 [Oncorhynchus masou formosanus]
Length = 128
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|326430331|gb|EGD75901.1| ubiquitin/ribosomal protein CEP52 [Salpingoeca sp. ATCC 50818]
Length = 128
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|326504848|dbj|BAK06715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 153
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQLDDGRTL+DYNI
Sbjct: 43 LIFAGKQLDDGRTLADYNI 61
>gi|242050130|ref|XP_002462809.1| hypothetical protein SORBIDRAFT_02g032360 [Sorghum bicolor]
gi|241926186|gb|EER99330.1| hypothetical protein SORBIDRAFT_02g032360 [Sorghum bicolor]
Length = 143
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQLDDGRTL+DYNI
Sbjct: 43 LIFAGKQLDDGRTLADYNI 61
>gi|332253686|ref|XP_003275965.1| PREDICTED: polyubiquitin-C-like [Nomascus leucogenys]
Length = 140
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|325096355|gb|EGC49665.1| ubiquitin [Ajellomyces capsulatus H88]
Length = 138
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 53 LIFAGKQLEDGRTLSDYNI 71
>gi|328864214|gb|AEB53190.1| ubuiquitin/ribosomal L40 fusion protein [Holothuria glaberrima]
Length = 128
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|242074418|ref|XP_002447145.1| hypothetical protein SORBIDRAFT_06g029360 [Sorghum bicolor]
gi|241938328|gb|EES11473.1| hypothetical protein SORBIDRAFT_06g029360 [Sorghum bicolor]
Length = 153
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQLDDGRTL+DYNI
Sbjct: 43 LIFAGKQLDDGRTLADYNI 61
Score = 38.1 bits (87), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTL+DYNI
Sbjct: 119 LIFAGKQLEDGRTLADYNI 137
>gi|328875773|gb|EGG24137.1| ubiquitin/ribosomal protein L40 fusion protein [Dictyostelium
fasciculatum]
Length = 138
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|336365182|gb|EGN93533.1| hypothetical protein SERLA73DRAFT_63550 [Serpula lacrymans var.
lacrymans S7.3]
Length = 101
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|326532606|dbj|BAK05232.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 128
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|324523172|gb|ADY48201.1| Ubiquitin-60S ribosomal protein L40 [Ascaris suum]
Length = 128
Score = 39.7 bits (91), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
>gi|336111806|gb|AEI16563.1| poly ubiquitin [Chelon labrosus]
Length = 107
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 42 LIFAGKQLEDGRTLSDYNI 60
>gi|332863200|ref|XP_003318055.1| PREDICTED: polyubiquitin-like [Pan troglodytes]
Length = 240
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 43 LIFAGKQLEDGRTLSDYNI 61
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 119 LIFAGKQLEDGRTLSDYNI 137
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 33 VFFAGKQLDDGRTLSDYNI 51
+ FAGKQL+DGRTLSDYNI
Sbjct: 195 LIFAGKQLEDGRTLSDYNI 213
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.316 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 504,077,417
Number of extensions: 12978338
Number of successful extensions: 34189
Number of sequences better than 10.0: 1702
Number of HSP's gapped: 34274
Number of HSP's successfully gapped: 4050
Length of query: 51
Length of database: 5,058,227,080
Length adjustment: 24
Effective length of query: 27
Effective length of database: 4,703,561,512
Effective search space: 126996160824
Effective search space used: 126996160824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)