BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_5217_orf1
(138 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|146319687|ref|YP_001199399.1| DNA repair protein RadA [Strept... 37 1.1
gi|223934013|ref|ZP_03625968.1| DNA repair protein RadA [Strepto... 37 1.1
gi|322376097|ref|ZP_08050607.1| DNA repair protein RadA [Strepto... 37 1.3
gi|335029750|ref|ZP_08523255.1| DNA repair protein RadA [Strepto... 36 1.4
gi|334266117|gb|EGL84602.1| DNA repair protein RadA [Streptococc... 36 1.4
gi|322388500|ref|ZP_08062102.1| DNA repair protein RadA [Strepto... 36 1.5
gi|322391146|ref|ZP_08064618.1| DNA repair protein RadA [Strepto... 36 1.5
gi|168492310|ref|ZP_02716453.1| DNA repair protein RadA [Strepto... 36 1.5
gi|225860066|ref|YP_002741575.1| DNA repair protein RadA [Strept... 36 1.5
gi|148996427|ref|ZP_01824145.1| DNA repair protein RadA [Strepto... 36 1.5
gi|225855812|ref|YP_002737323.1| DNA repair protein RadA [Strept... 36 1.5
gi|149010884|ref|ZP_01832189.1| DNA repair protein RadA [Strepto... 36 1.6
gi|149006815|ref|ZP_01830501.1| DNA repair protein RadA [Strepto... 36 1.6
gi|15902069|ref|NP_357619.1| DNA repair protein RadA [Streptococ... 36 1.6
gi|148995211|ref|ZP_01824046.1| DNA repair protein RadA [Strepto... 36 1.7
gi|157150256|ref|YP_001449492.1| DNA repair protein RadA [Strept... 35 2.7
gi|262281811|ref|ZP_06059580.1| DNA repair protein RadA [Strepto... 35 3.0
gi|301799214|emb|CBW31727.1| putative DNA repair protein [Strept... 35 3.0
gi|335031985|ref|ZP_08525398.1| DNA repair protein RadA [Strepto... 35 3.1
gi|319940296|ref|ZP_08014648.1| DNA repair protein radA [Strepto... 35 3.3
gi|315222781|ref|ZP_07864668.1| DNA repair protein RadA [Strepto... 35 3.4
gi|322386670|ref|ZP_08060295.1| DNA repair protein RadA [Strepto... 35 3.4
gi|301793344|emb|CBW35705.1| putative DNA repair protein [Strept... 35 3.4
gi|307704432|ref|ZP_07641343.1| DNA repair protein RadA [Strepto... 35 4.9
gi|337282805|ref|YP_004622276.1| DNA repair protein RadA [Strept... 35 5.0
gi|309800214|ref|ZP_07694395.1| DNA repair protein RadA [Strepto... 35 5.0
gi|307706902|ref|ZP_07643703.1| DNA repair protein RadA [Strepto... 35 5.1
gi|340771312|gb|EGR93827.1| DNA repair protein RadA [Streptococc... 35 5.1
gi|307710062|ref|ZP_07646506.1| DNA repair protein RadA [Strepto... 35 5.1
gi|306828466|ref|ZP_07461661.1| DNA repair protein RadA [Strepto... 35 5.1
>gi|146319687|ref|YP_001199399.1| DNA repair protein RadA [Streptococcus suis 05ZYH33]
gi|146321881|ref|YP_001201592.1| DNA repair protein RadA [Streptococcus suis 98HAH33]
gi|253752681|ref|YP_003025822.1| DNA repair protein [Streptococcus suis SC84]
gi|253754507|ref|YP_003027648.1| DNA repair protein [Streptococcus suis P1/7]
gi|253756440|ref|YP_003029580.1| DNA repair protein [Streptococcus suis BM407]
gi|145690493|gb|ABP90999.1| Predicted ATP-dependent serine protease [Streptococcus suis
05ZYH33]
gi|145692687|gb|ABP93192.1| Predicted ATP-dependent serine protease [Streptococcus suis
98HAH33]
gi|251816970|emb|CAZ52619.1| putative DNA repair protein [Streptococcus suis SC84]
gi|251818904|emb|CAZ56747.1| putative DNA repair protein [Streptococcus suis BM407]
gi|251820753|emb|CAR47515.1| putative DNA repair protein [Streptococcus suis P1/7]
gi|292559300|gb|ADE32301.1| DNA repair protein RadA [Streptococcus suis GZ1]
gi|319759097|gb|ADV71039.1| DNA repair protein RadA [Streptococcus suis JS14]
Length = 455
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 327 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKP 384
Query: 131 TNPE 134
TNP+
Sbjct: 385 TNPQ 388
>gi|223934013|ref|ZP_03625968.1| DNA repair protein RadA [Streptococcus suis 89/1591]
gi|302024569|ref|ZP_07249780.1| DNA repair protein RadA [Streptococcus suis 05HAS68]
gi|330833653|ref|YP_004402478.1| DNA repair protein [Streptococcus suis ST3]
gi|223897327|gb|EEF63733.1| DNA repair protein RadA [Streptococcus suis 89/1591]
gi|329307876|gb|AEB82292.1| DNA repair protein [Streptococcus suis ST3]
Length = 456
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 327 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKP 384
Query: 131 TNPE 134
TNP+
Sbjct: 385 TNPQ 388
>gi|322376097|ref|ZP_08050607.1| DNA repair protein RadA [Streptococcus sp. C300]
gi|321279047|gb|EFX56090.1| DNA repair protein RadA [Streptococcus sp. C300]
Length = 445
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 317 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 374
Query: 131 TNPE 134
TNP+
Sbjct: 375 TNPQ 378
>gi|335029750|ref|ZP_08523255.1| DNA repair protein RadA [Streptococcus infantis SK1076]
gi|334268274|gb|EGL86716.1| DNA repair protein RadA [Streptococcus infantis SK1076]
Length = 445
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 317 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 374
Query: 131 TNPE 134
TNP+
Sbjct: 375 TNPQ 378
>gi|334266117|gb|EGL84602.1| DNA repair protein RadA [Streptococcus oralis SK255]
Length = 445
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 317 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 374
Query: 131 TNPE 134
TNP+
Sbjct: 375 TNPQ 378
>gi|322388500|ref|ZP_08062102.1| DNA repair protein RadA [Streptococcus infantis ATCC 700779]
gi|321140618|gb|EFX36121.1| DNA repair protein RadA [Streptococcus infantis ATCC 700779]
Length = 420
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|322391146|ref|ZP_08064618.1| DNA repair protein RadA [Streptococcus peroris ATCC 700780]
gi|321145899|gb|EFX41288.1| DNA repair protein RadA [Streptococcus peroris ATCC 700780]
Length = 420
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|168492310|ref|ZP_02716453.1| DNA repair protein RadA [Streptococcus pneumoniae CDC0288-04]
gi|183573469|gb|EDT93997.1| DNA repair protein RadA [Streptococcus pneumoniae CDC0288-04]
Length = 420
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|225860066|ref|YP_002741575.1| DNA repair protein RadA [Streptococcus pneumoniae Taiwan19F-14]
gi|298229194|ref|ZP_06962875.1| DNA repair protein RadA [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254026|ref|ZP_06977612.1| DNA repair protein RadA [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298501814|ref|YP_003723754.1| DNA repair protein RadA [Streptococcus pneumoniae TCH8431/19A]
gi|225726622|gb|ACO22473.1| DNA repair protein RadA [Streptococcus pneumoniae Taiwan19F-14]
gi|298237409|gb|ADI68540.1| DNA repair protein RadA [Streptococcus pneumoniae TCH8431/19A]
gi|327390439|gb|EGE88779.1| DNA repair protein RadA [Streptococcus pneumoniae GA04375]
Length = 420
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|148996427|ref|ZP_01824145.1| DNA repair protein RadA [Streptococcus pneumoniae SP11-BS70]
gi|168576941|ref|ZP_02722783.1| DNA repair protein RadA [Streptococcus pneumoniae MLV-016]
gi|307066705|ref|YP_003875671.1| putative ATP-dependent serine protease [Streptococcus pneumoniae
AP200]
gi|147757002|gb|EDK64041.1| DNA repair protein RadA [Streptococcus pneumoniae SP11-BS70]
gi|183577404|gb|EDT97932.1| DNA repair protein RadA [Streptococcus pneumoniae MLV-016]
gi|306408242|gb|ADM83669.1| Predicted ATP-dependent serine protease [Streptococcus pneumoniae
AP200]
gi|332201953|gb|EGJ16022.1| DNA repair protein RadA [Streptococcus pneumoniae GA41317]
Length = 420
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|225855812|ref|YP_002737323.1| DNA repair protein RadA [Streptococcus pneumoniae P1031]
gi|225725920|gb|ACO21772.1| DNA repair protein RadA [Streptococcus pneumoniae P1031]
Length = 420
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|149010884|ref|ZP_01832189.1| DNA repair protein RadA [Streptococcus pneumoniae SP19-BS75]
gi|182682993|ref|YP_001834740.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae CGSP14]
gi|303255540|ref|ZP_07341597.1| DNA repair protein RadA [Streptococcus pneumoniae BS455]
gi|303260659|ref|ZP_07346622.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP-BS293]
gi|303260823|ref|ZP_07346772.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP14-BS292]
gi|303263150|ref|ZP_07349073.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS397]
gi|303267496|ref|ZP_07353346.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS457]
gi|303269463|ref|ZP_07355230.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS458]
gi|147764520|gb|EDK71450.1| DNA repair protein RadA [Streptococcus pneumoniae SP19-BS75]
gi|182628327|gb|ACB89275.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae CGSP14]
gi|301800995|emb|CBW33657.1| putative DNA repair protein [Streptococcus pneumoniae INV200]
gi|302597501|gb|EFL64590.1| DNA repair protein RadA [Streptococcus pneumoniae BS455]
gi|302637660|gb|EFL68146.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP14-BS292]
gi|302638189|gb|EFL68661.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae SP-BS293]
gi|302640997|gb|EFL71377.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS458]
gi|302642971|gb|EFL73268.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS457]
gi|302646923|gb|EFL77147.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae BS397]
Length = 420
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|149006815|ref|ZP_01830501.1| DNA repair protein RadA [Streptococcus pneumoniae SP18-BS74]
gi|169832478|ref|YP_001693546.1| DNA repair protein RadA [Streptococcus pneumoniae Hungary19A-6]
gi|221230979|ref|YP_002510131.1| DNA repair protein [Streptococcus pneumoniae ATCC 700669]
gi|225853651|ref|YP_002735163.1| DNA repair protein RadA [Streptococcus pneumoniae JJA]
gi|307126253|ref|YP_003878284.1| DNA repair protein RadA [Streptococcus pneumoniae 670-6B]
gi|147761730|gb|EDK68694.1| DNA repair protein RadA [Streptococcus pneumoniae SP18-BS74]
gi|168994980|gb|ACA35592.1| DNA repair protein RadA [Streptococcus pneumoniae Hungary19A-6]
gi|220673439|emb|CAR67902.1| putative DNA repair protein [Streptococcus pneumoniae ATCC 700669]
gi|225722577|gb|ACO18430.1| DNA repair protein RadA [Streptococcus pneumoniae JJA]
gi|306483315|gb|ADM90184.1| DNA repair protein RadA [Streptococcus pneumoniae 670-6B]
gi|332076484|gb|EGI86946.1| DNA repair protein RadA [Streptococcus pneumoniae GA17545]
Length = 420
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|15902069|ref|NP_357619.1| DNA repair protein RadA [Streptococcus pneumoniae R6]
gi|111657252|ref|ZP_01408020.1| hypothetical protein SpneT_02001532 [Streptococcus pneumoniae
TIGR4]
gi|116516243|ref|YP_815444.1| DNA repair protein RadA [Streptococcus pneumoniae D39]
gi|148985364|ref|ZP_01818569.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|148986209|ref|ZP_01819161.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|148987741|ref|ZP_01819204.1| DNA repair protein RadA [Streptococcus pneumoniae SP6-BS73]
gi|149004176|ref|ZP_01828973.1| DNA repair protein RadA [Streptococcus pneumoniae SP14-BS69]
gi|149023462|ref|ZP_01836051.1| DNA repair protein RadA [Streptococcus pneumoniae SP23-BS72]
gi|168483674|ref|ZP_02708626.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1873-00]
gi|168486726|ref|ZP_02711234.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1087-00]
gi|168493716|ref|ZP_02717859.1| DNA repair protein RadA [Streptococcus pneumoniae CDC3059-06]
gi|194397801|ref|YP_002036745.1| DNA repair protein RadA [Streptococcus pneumoniae G54]
gi|225857886|ref|YP_002739396.1| DNA repair protein RadA [Streptococcus pneumoniae 70585]
gi|237650018|ref|ZP_04524270.1| DNA repair protein RadA [Streptococcus pneumoniae CCRI 1974]
gi|237822607|ref|ZP_04598452.1| DNA repair protein RadA [Streptococcus pneumoniae CCRI 1974M2]
gi|15457555|gb|AAK98829.1| DNA repair: sensitivity to gamma and UV radiation [Streptococcus
pneumoniae R6]
gi|116076819|gb|ABJ54539.1| DNA repair protein RadA [Streptococcus pneumoniae D39]
gi|147757838|gb|EDK64849.1| DNA repair protein RadA [Streptococcus pneumoniae SP14-BS69]
gi|147921823|gb|EDK72951.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|147922322|gb|EDK73442.1| DNA repair protein RadA [Streptococcus pneumoniae SP3-BS71]
gi|147926205|gb|EDK77278.1| DNA repair protein RadA [Streptococcus pneumoniae SP6-BS73]
gi|147929785|gb|EDK80775.1| DNA repair protein RadA [Streptococcus pneumoniae SP23-BS72]
gi|172042959|gb|EDT51005.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1873-00]
gi|183570304|gb|EDT90832.1| DNA repair protein RadA [Streptococcus pneumoniae CDC1087-00]
gi|183576031|gb|EDT96559.1| DNA repair protein RadA [Streptococcus pneumoniae CDC3059-06]
gi|194357468|gb|ACF55916.1| DNA repair protein RadA [Streptococcus pneumoniae G54]
gi|225720045|gb|ACO15899.1| DNA repair protein RadA [Streptococcus pneumoniae 70585]
gi|332077331|gb|EGI87792.1| DNA repair protein RadA [Streptococcus pneumoniae GA41301]
gi|332204051|gb|EGJ18116.1| DNA repair protein RadA [Streptococcus pneumoniae GA47901]
gi|332205055|gb|EGJ19118.1| DNA repair protein RadA [Streptococcus pneumoniae GA47368]
Length = 420
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|148995211|ref|ZP_01824046.1| DNA repair protein RadA [Streptococcus pneumoniae SP9-BS68]
gi|168489513|ref|ZP_02713712.1| DNA repair protein RadA [Streptococcus pneumoniae SP195]
gi|147926813|gb|EDK77868.1| DNA repair protein RadA [Streptococcus pneumoniae SP9-BS68]
gi|183572080|gb|EDT92608.1| DNA repair protein RadA [Streptococcus pneumoniae SP195]
gi|332075680|gb|EGI86147.1| DNA repair protein RadA [Streptococcus pneumoniae GA17570]
Length = 420
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|157150256|ref|YP_001449492.1| DNA repair protein RadA [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075050|gb|ABV09733.1| DNA repair protein RadA [Streptococcus gordonii str. Challis
substr. CH1]
Length = 466
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 338 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLP 395
Query: 131 TNPE 134
TNP+
Sbjct: 396 TNPQ 399
>gi|262281811|ref|ZP_06059580.1| DNA repair protein RadA [Streptococcus sp. 2_1_36FAA]
gi|262262265|gb|EEY80962.1| DNA repair protein RadA [Streptococcus sp. 2_1_36FAA]
Length = 445
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 317 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLP 374
Query: 131 TNPE 134
TNP+
Sbjct: 375 TNPQ 378
>gi|301799214|emb|CBW31727.1| putative DNA repair protein [Streptococcus pneumoniae OXC141]
Length = 420
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V + Y D
Sbjct: 292 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASIYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|335031985|ref|ZP_08525398.1| DNA repair protein RadA [Streptococcus anginosus SK52]
gi|333768267|gb|EGL45466.1| DNA repair protein RadA [Streptococcus anginosus SK52]
Length = 475
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 347 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLP 404
Query: 131 TNPE 134
TNP+
Sbjct: 405 TNPQ 408
>gi|319940296|ref|ZP_08014648.1| DNA repair protein radA [Streptococcus anginosus 1_2_62CV]
gi|319810598|gb|EFW06934.1| DNA repair protein radA [Streptococcus anginosus 1_2_62CV]
Length = 465
Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 337 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLP 394
Query: 131 TNPE 134
TNP+
Sbjct: 395 TNPQ 398
>gi|315222781|ref|ZP_07864668.1| DNA repair protein RadA [Streptococcus anginosus F0211]
gi|315188144|gb|EFU21872.1| DNA repair protein RadA [Streptococcus anginosus F0211]
Length = 467
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 339 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLP 396
Query: 131 TNPE 134
TNP+
Sbjct: 397 TNPQ 400
>gi|322386670|ref|ZP_08060295.1| DNA repair protein RadA [Streptococcus cristatus ATCC 51100]
gi|321269343|gb|EFX52278.1| DNA repair protein RadA [Streptococcus cristatus ATCC 51100]
Length = 418
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 289 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLP 346
Query: 131 TNPE 134
TNP+
Sbjct: 347 TNPQ 350
>gi|301793344|emb|CBW35705.1| putative DNA repair protein [Streptococcus pneumoniae INV104]
Length = 420
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+++ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 292 GLDFNRASLIMSVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 349
Query: 131 TNPE 134
TNP+
Sbjct: 350 TNPQ 353
>gi|307704432|ref|ZP_07641343.1| DNA repair protein RadA [Streptococcus mitis SK597]
gi|322378200|ref|ZP_08052684.1| DNA repair protein RadA [Streptococcus sp. M334]
gi|307622005|gb|EFO01031.1| DNA repair protein RadA [Streptococcus mitis SK597]
gi|321280830|gb|EFX57846.1| DNA repair protein RadA [Streptococcus sp. M334]
gi|339457674|gb|EGP70241.1| DNA repair protein RadA [Streptococcus mitis SK1080]
gi|339457932|gb|EGP70485.1| DNA repair protein RadA [Streptococcus mitis SK1073]
Length = 407
Score = 34.7 bits (78), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 279 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 336
Query: 131 TNPE 134
TNP+
Sbjct: 337 TNPQ 340
>gi|337282805|ref|YP_004622276.1| DNA repair protein RadA [Streptococcus parasanguinis ATCC 15912]
gi|335370398|gb|AEH56348.1| DNA repair protein RadA [Streptococcus parasanguinis ATCC 15912]
Length = 397
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 269 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 326
Query: 131 TNPE 134
TNP+
Sbjct: 327 TNPQ 330
>gi|309800214|ref|ZP_07694395.1| DNA repair protein RadA [Streptococcus infantis SK1302]
gi|308116155|gb|EFO53650.1| DNA repair protein RadA [Streptococcus infantis SK1302]
Length = 407
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 279 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 336
Query: 131 TNPE 134
TNP+
Sbjct: 337 TNPQ 340
>gi|307706902|ref|ZP_07643703.1| DNA repair protein RadA [Streptococcus mitis SK321]
gi|307617694|gb|EFN96860.1| DNA repair protein RadA [Streptococcus mitis SK321]
Length = 397
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 269 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 326
Query: 131 TNPE 134
TNP+
Sbjct: 327 TNPQ 330
>gi|340771312|gb|EGR93827.1| DNA repair protein RadA [Streptococcus mitis bv. 2 str. F0392]
Length = 407
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 279 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 336
Query: 131 TNPE 134
TNP+
Sbjct: 337 TNPQ 340
>gi|307710062|ref|ZP_07646506.1| DNA repair protein RadA [Streptococcus mitis SK564]
gi|307619042|gb|EFN98174.1| DNA repair protein RadA [Streptococcus mitis SK564]
Length = 407
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 279 GLDFNRASLIMAVLGKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 336
Query: 131 TNPE 134
TNP+
Sbjct: 337 TNPQ 340
>gi|306828466|ref|ZP_07461661.1| DNA repair protein RadA [Streptococcus mitis ATCC 6249]
gi|304429265|gb|EFM32350.1| DNA repair protein RadA [Streptococcus mitis ATCC 6249]
Length = 397
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 72 GSDLHLRTLILALESKVAGLLRLIQETQASLKESG-LSFPFSAADGAVEVQFKAAYTDDL 130
G D + +LI+A+ K AGLL +Q A LK +G + A D AV V ++Y D
Sbjct: 269 GLDFNRASLIMAVLEKRAGLL--LQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKP 326
Query: 131 TNPE 134
TNP+
Sbjct: 327 TNPQ 330
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 998,433,500
Number of extensions: 26683233
Number of successful extensions: 54396
Number of sequences better than 10.0: 52
Number of HSP's gapped: 54710
Number of HSP's successfully gapped: 52
Length of query: 138
Length of database: 5,058,227,080
Length adjustment: 103
Effective length of query: 35
Effective length of database: 3,536,120,684
Effective search space: 123764223940
Effective search space used: 123764223940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)