BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_4484_orf1
(52 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|156121001|ref|NP_001095647.1| general transcription factor II... 101 3e-20
gi|73957639|ref|XP_856738.1| PREDICTED: similar to general trans... 100 1e-19
gi|119590002|gb|EAW69596.1| general transcription factor II, i, ... 99 1e-19
gi|119590000|gb|EAW69594.1| general transcription factor II, i, ... 99 2e-19
gi|73957637|ref|XP_848656.1| PREDICTED: similar to general trans... 99 2e-19
gi|14670354|ref|NP_127494.1| general transcription factor II-I i... 96 2e-18
gi|14670350|ref|NP_127492.1| general transcription factor II-I i... 95 3e-18
gi|124001576|ref|NP_001074216.1| general transcription factor II... 91 5e-17
gi|124001574|ref|NP_001074215.1| general transcription factor II... 90 1e-16
gi|71533987|gb|AAH99907.1| General transcription factor II, i [H... 90 1e-16
gi|148687502|gb|EDL19449.1| general transcription factor II I, i... 90 1e-16
gi|73957629|ref|XP_856540.1| PREDICTED: similar to GTF2I repeat ... 55 3e-06
gi|13325322|gb|AAH04472.1| GTF2I protein [Homo sapiens] >gi|3058... 55 3e-06
gi|119590003|gb|EAW69597.1| general transcription factor II, i, ... 55 3e-06
gi|9800523|gb|AAF99338.1|AF289666_2 GTF2I [Mus musculus] 55 3e-06
gi|119590001|gb|EAW69595.1| general transcription factor II, i, ... 55 4e-06
gi|148687500|gb|EDL19447.1| general transcription factor II I, i... 53 1e-05
gi|148687503|gb|EDL19450.1| general transcription factor II I, i... 53 1e-05
gi|2895590|gb|AAC02991.1| TFII-I protein short form [Mus musculus] 53 1e-05
gi|124001578|ref|NP_001074218.1| general transcription factor II... 53 1e-05
gi|124001570|ref|NP_001074217.1| general transcription factor II... 53 1e-05
gi|2415382|gb|AAB70791.1| TFII-I protein [Homo sapiens] 53 2e-05
gi|169881252|ref|NP_001509.3| general transcription factor II-I ... 53 2e-05
gi|126314119|ref|XP_001363530.1| PREDICTED: general transcriptio... 53 2e-05
gi|1870688|gb|AAB48826.1| Bruton's tyrosine kinase-associated pr... 53 2e-05
gi|148687501|gb|EDL19448.1| general transcription factor II I, i... 53 2e-05
gi|73957641|ref|XP_536840.2| PREDICTED: similar to general trans... 53 2e-05
gi|2895588|gb|AAC02990.1| TFII-I protein long form [Mus musculus] 53 2e-05
gi|2653821|gb|AAC53569.1| BAP-135 homolog [Mus musculus] 53 2e-05
gi|124001572|ref|NP_034495.2| general transcription factor II-I ... 53 2e-05
>gi|156121001|ref|NP_001095647.1| general transcription factor II-I [Bos taurus]
gi|205831548|sp|A7MB80.1|GTF2I_BOVIN RecName: Full=General transcription factor II-I; Short=GTFII-I;
Short=TFII-I
gi|154426134|gb|AAI51388.1| GTF2I protein [Bos taurus]
gi|296472974|gb|DAA15089.1| general transcription factor IIi [Bos taurus]
Length = 978
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/52 (96%), Positives = 51/52 (98%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 286
>gi|73957639|ref|XP_856738.1| PREDICTED: similar to general transcription factor II, i isoform 3
isoform 8 [Canis familiaris]
Length = 978
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/52 (94%), Positives = 50/52 (96%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQAGPSE DDVDDKLPLSKSLQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQAGPSENDDVDDKLPLSKSLQGSHHSSEGNEGT 286
>gi|119590002|gb|EAW69596.1| general transcription factor II, i, isoform CRA_c [Homo sapiens]
Length = 352
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 49/52 (94%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQAGPSETDDVD+K PLSK LQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQAGPSETDDVDEKQPLSKPLQGSHHSSEGNEGT 286
>gi|119590000|gb|EAW69594.1| general transcription factor II, i, isoform CRA_a [Homo sapiens]
Length = 373
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 49/52 (94%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQAGPSETDDVD+K PLSK LQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQAGPSETDDVDEKQPLSKPLQGSHHSSEGNEGT 286
>gi|73957637|ref|XP_848656.1| PREDICTED: similar to general transcription factor II, i isoform 1
isoform 2 [Canis familiaris]
Length = 999
Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/52 (94%), Positives = 50/52 (96%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQAGPSE DDVDDKLPLSKSLQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQAGPSENDDVDDKLPLSKSLQGSHHSSEGNEGT 286
>gi|14670354|ref|NP_127494.1| general transcription factor II-I isoform 3 [Homo sapiens]
gi|2827205|gb|AAC08314.1| general transcription factor 2-I [Homo sapiens]
gi|41472585|gb|AAS07463.1| unknown [Homo sapiens]
Length = 977
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 47/52 (90%), Positives = 49/52 (94%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQAGPSETDDVD+K PLSK LQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQAGPSETDDVDEKQPLSKPLQGSHHSSEGNEGT 286
>gi|14670350|ref|NP_127492.1| general transcription factor II-I isoform 1 [Homo sapiens]
gi|332866237|ref|XP_001151627.2| PREDICTED: general transcription factor II-I isoform 7 [Pan
troglodytes]
gi|17865459|sp|P78347.2|GTF2I_HUMAN RecName: Full=General transcription factor II-I; Short=GTFII-I;
Short=TFII-I; AltName: Full=Bruton tyrosine
kinase-associated protein 135; Short=BAP-135;
Short=BTK-associated protein 135; AltName:
Full=SRF-Phox1-interacting protein; Short=SPIN; AltName:
Full=Williams-Beuren syndrome chromosomal region 6
protein
gi|19697491|gb|AAL93085.1|AC004883_1 general transcription factor 2I [Homo sapiens]
gi|2827180|gb|AAC08312.1| general transcription factor 2-I; alternative splice product [Homo
sapiens]
gi|41472583|gb|AAS07461.1| unknown [Homo sapiens]
Length = 998
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/52 (90%), Positives = 49/52 (94%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQAGPSETDDVD+K PLSK LQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQAGPSETDDVDEKQPLSKPLQGSHHSSEGNEGT 286
>gi|124001576|ref|NP_001074216.1| general transcription factor II-I isoform 3 [Mus musculus]
gi|17223642|gb|AAK49785.1| transcription factor TFII-I-alpha [Mus musculus]
gi|148687498|gb|EDL19445.1| general transcription factor II I, isoform CRA_b [Mus musculus]
Length = 977
Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 46/52 (88%), Positives = 49/52 (94%), Gaps = 1/52 (1%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQ GPSETD VD+KLPLSK+LQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQ-GPSETDGVDEKLPLSKALQGSHHSSEGNEGT 285
>gi|124001574|ref|NP_001074215.1| general transcription factor II-I isoform 1 [Mus musculus]
gi|39932733|sp|Q9ESZ8.3|GTF2I_MOUSE RecName: Full=General transcription factor II-I; Short=GTFII-I;
Short=TFII-I; AltName: Full=Bruton tyrosine
kinase-associated protein 135; Short=BAP-135;
Short=BTK-associated protein 135
gi|17223648|gb|AAK49788.1| transcription factor TFII-I-gamma [Mus musculus]
gi|31418544|gb|AAH53044.1| General transcription factor II I [Mus musculus]
gi|148687499|gb|EDL19446.1| general transcription factor II I, isoform CRA_c [Mus musculus]
Length = 998
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/52 (88%), Positives = 49/52 (94%), Gaps = 1/52 (1%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQ GPSETD VD+KLPLSK+LQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQ-GPSETDGVDEKLPLSKALQGSHHSSEGNEGT 285
>gi|71533987|gb|AAH99907.1| General transcription factor II, i [Homo sapiens]
Length = 976
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/52 (88%), Positives = 48/52 (92%), Gaps = 1/52 (1%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQ GPSETDDVD+K PLSK LQGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNIQ-GPSETDDVDEKQPLSKPLQGSHHSSEGNEGT 285
>gi|148687502|gb|EDL19449.1| general transcription factor II I, isoform CRA_f [Mus musculus]
Length = 1046
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/52 (88%), Positives = 49/52 (94%), Gaps = 1/52 (1%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNIQ GPSETD VD+KLPLSK+LQGSHHSSEGNEGT
Sbjct: 283 AAVTVKEESEDPDYYQYNIQ-GPSETDGVDEKLPLSKALQGSHHSSEGNEGT 333
>gi|73957629|ref|XP_856540.1| PREDICTED: similar to GTF2I repeat domain containing 2 isoform 4
[Canis familiaris]
Length = 411
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|13325322|gb|AAH04472.1| GTF2I protein [Homo sapiens]
gi|30583739|gb|AAP36118.1| general transcription factor II, i [Homo sapiens]
gi|41472582|gb|AAS07460.1| unknown [Homo sapiens]
gi|119590004|gb|EAW69598.1| general transcription factor II, i, isoform CRA_e [Homo sapiens]
Length = 274
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|119590003|gb|EAW69597.1| general transcription factor II, i, isoform CRA_d [Homo sapiens]
Length = 332
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|9800523|gb|AAF99338.1|AF289666_2 GTF2I [Mus musculus]
Length = 295
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|119590001|gb|EAW69595.1| general transcription factor II, i, isoform CRA_b [Homo sapiens]
Length = 353
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|148687500|gb|EDL19447.1| general transcription factor II I, isoform CRA_d [Mus musculus]
Length = 984
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 261 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 292
>gi|148687503|gb|EDL19450.1| general transcription factor II I, isoform CRA_g [Mus musculus]
Length = 972
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 245 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 276
>gi|2895590|gb|AAC02991.1| TFII-I protein short form [Mus musculus]
Length = 958
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|124001578|ref|NP_001074218.1| general transcription factor II-I isoform 5 [Mus musculus]
gi|74180958|dbj|BAE27759.1| unnamed protein product [Mus musculus]
Length = 962
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|124001570|ref|NP_001074217.1| general transcription factor II-I isoform 4 [Mus musculus]
gi|17223646|gb|AAK49787.1| transcription factor TFII-I-delta [Mus musculus]
gi|148687497|gb|EDL19444.1| general transcription factor II I, isoform CRA_a [Mus musculus]
Length = 958
Score = 53.1 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|2415382|gb|AAB70791.1| TFII-I protein [Homo sapiens]
Length = 957
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|169881252|ref|NP_001509.3| general transcription factor II-I isoform 4 [Homo sapiens]
gi|2440078|emb|CAA75163.1| SPIN protein [Homo sapiens]
gi|2827207|gb|AAC08315.1| general transcription factor 2-I [Homo sapiens]
gi|41472586|gb|AAS07464.1| unknown [Homo sapiens]
gi|47122603|gb|AAH70484.1| General transcription factor II, i [Homo sapiens]
Length = 957
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|126314119|ref|XP_001363530.1| PREDICTED: general transcription factor II-I isoform 5 [Monodelphis
domestica]
Length = 952
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/52 (55%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYN+ QGSHHSSEGNEGT
Sbjct: 233 AAVTVKEESEDPDYYQYNV--------------------QGSHHSSEGNEGT 264
>gi|1870688|gb|AAB48826.1| Bruton's tyrosine kinase-associated protein-135 [Homo sapiens]
Length = 957
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|148687501|gb|EDL19448.1| general transcription factor II I, isoform CRA_e [Mus musculus]
Length = 1005
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 261 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 292
>gi|73957641|ref|XP_536840.2| PREDICTED: similar to general transcription factor II, i isoform 4
isoform 1 [Canis familiaris]
Length = 958
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|2895588|gb|AAC02990.1| TFII-I protein long form [Mus musculus]
Length = 979
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|2653821|gb|AAC53569.1| BAP-135 homolog [Mus musculus]
Length = 978
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
>gi|124001572|ref|NP_034495.2| general transcription factor II-I isoform 2 [Mus musculus]
gi|17223644|gb|AAK49786.1| transcription factor TFII-I-beta [Mus musculus]
gi|148687504|gb|EDL19451.1| general transcription factor II I, isoform CRA_h [Mus musculus]
Length = 979
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 31/52 (59%), Gaps = 20/52 (38%)
Query: 1 AAVTLMEESEDPDYYQYNIQAGPSETDDVDDKLPLSKSLQGSHHSSEGNEGT 52
AAVT+ EESEDPDYYQYNI QGSHHSSEGNEGT
Sbjct: 235 AAVTVKEESEDPDYYQYNI--------------------QGSHHSSEGNEGT 266
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.299 0.122 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 570,946,029
Number of extensions: 17028690
Number of successful extensions: 23035
Number of sequences better than 10.0: 74
Number of HSP's gapped: 23179
Number of HSP's successfully gapped: 74
Length of query: 52
Length of database: 5,058,227,080
Length adjustment: 25
Effective length of query: 27
Effective length of database: 4,688,783,780
Effective search space: 126597162060
Effective search space used: 126597162060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 76 (33.9 bits)