BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_4023_orf2
(170 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|237832557|ref|XP_002365576.1| hypothetical protein, conserved... 57 9e-07
gi|221488028|gb|EEE26242.1| conserved hypothetical protein [Toxo... 57 9e-07
gi|325118419|emb|CBZ53970.1| conserved hypothetical protein [Neo... 50 1e-04
gi|156088155|ref|XP_001611484.1| hypothetical protein [Babesia b... 41 0.059
gi|124504897|ref|XP_001351191.1| conserved protein, unknown func... 37 0.86
gi|83273695|ref|XP_729511.1| hypothetical protein [Plasmodium yo... 35 5.4
>gi|237832557|ref|XP_002365576.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211963240|gb|EEA98435.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 536
Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 28/97 (28%)
Query: 89 IDWAFWERSIAHKDIVNCLRSHYEQQESAYGRLLGXXXXX-------------------- 128
IDWA WE IAHKDI+NCL++ Y Q R LG
Sbjct: 62 IDWAKWESQIAHKDILNCLKTFYTNQVQILDRALGALETAKTPAPCEGAEKGWALFDAAL 121
Query: 129 --------XXXXXXXKGAAALWLSCRNPPLSALSTND 157
GA ALW+SC NPP+ ++TN+
Sbjct: 122 SACAKSVEKSEELLSNGARALWVSCSNPPVWKVNTNE 158
>gi|221488028|gb|EEE26242.1| conserved hypothetical protein [Toxoplasma gondii GT1]
gi|221508549|gb|EEE34118.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 536
Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 28/97 (28%)
Query: 89 IDWAFWERSIAHKDIVNCLRSHYEQQESAYGRLLGXXXXX-------------------- 128
IDWA WE IAHKDI+NCL++ Y Q R LG
Sbjct: 62 IDWAKWESQIAHKDILNCLKTFYTNQVQILDRALGALETAKTPAPCEGAEKGWALFDAAL 121
Query: 129 --------XXXXXXXKGAAALWLSCRNPPLSALSTND 157
GA ALW+SC NPP+ ++TN+
Sbjct: 122 SACAKSVEKSEELLSNGARALWVSCSNPPVWKVNTNE 158
>gi|325118419|emb|CBZ53970.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 536
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 89 IDWAFWERSIAHKDIVNCLRSHYEQQESAYGRLLGX------------------------ 124
IDWA WE IAHKDI++C+++ Y Q LG
Sbjct: 62 IDWAKWEGQIAHKDILHCMKTFYTSQVQILDLALGALEKARTPAPCEGAEKGWALYDAAL 121
Query: 125 ----XXXXXXXXXXXKGAAALWLSCRNPPLSALSTND 157
GA ALW+SC NPP+ ++TN+
Sbjct: 122 RACTKSVEKSEELLANGARALWVSCNNPPVWKVNTNE 158
>gi|156088155|ref|XP_001611484.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798738|gb|EDO07916.1| conserved hypothetical protein [Babesia bovis]
Length = 548
Score = 40.8 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 22/94 (23%)
Query: 86 NKGIDWAFWERSIAHKDIVNCLRSHYEQQESAYGRLLGX--------------------- 124
N+G+DW WE+ IAHKDI+ ++ Y+ + R
Sbjct: 67 NEGVDWDKWEKLIAHKDILQHMKRTYDANMAMIERTANMEGDMSHLDTDWELYENARQNC 126
Query: 125 -XXXXXXXXXXXKGAAALWLSCRNPPLSALSTND 157
G+ ALW+S NPP + TN+
Sbjct: 127 NQATRTVKKIIADGSKALWVSQNNPPAWKVDTNE 160
>gi|124504897|ref|XP_001351191.1| conserved protein, unknown function [Plasmodium falciparum 3D7]
gi|7672220|emb|CAA15604.2| conserved protein, unknown function [Plasmodium falciparum 3D7]
Length = 609
Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 22/94 (23%)
Query: 86 NKGIDWAFWERSIAHKDIVNCLRSHYEQQESAYGRLLGXXXXXXXXXXXXK--------- 136
+K IDW W I++K++++C+++ Y+ Q L G K
Sbjct: 62 SKSIDWVDWNEKISNKELLSCMKNFYDNQMKMLQELGGEKEGNLKEGEEEKIFEDALKNC 121
Query: 137 -------------GAAALWLSCRNPPLSALSTND 157
GA LW++ NP +S + N+
Sbjct: 122 KESEEISKKLLVDGAKTLWINFHNPNVSNVDNNE 155
>gi|83273695|ref|XP_729511.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
gi|23487522|gb|EAA21076.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 572
Score = 34.7 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 87 KGIDWAFWERSIAHKDIVNCLRSHYEQQESAYGRLLGXXXXXXXXXXXXK---------- 136
K IDW W I++K+++ C+++ Y+ Q SA + +
Sbjct: 63 KKIDWNKWNEKISNKELLLCMKNFYDNQMSALEAMEEGEKKESGSKKSEEDKLFEEALNN 122
Query: 137 --------------GAAALWLSCRNPPLSALSTND 157
GA LW+S NP ++ L N+
Sbjct: 123 CKKAEETSAKLLIDGAKTLWISFHNPSVNNLDNNE 157
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.321 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,048,385,600
Number of extensions: 23041888
Number of successful extensions: 29523
Number of sequences better than 10.0: 7
Number of HSP's gapped: 29563
Number of HSP's successfully gapped: 7
Length of query: 170
Length of database: 5,058,227,080
Length adjustment: 129
Effective length of query: 41
Effective length of database: 3,151,899,652
Effective search space: 129227885732
Effective search space used: 129227885732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)