BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_3826_orf4
(91 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|332848238|ref|XP_001143115.2| PREDICTED: transcription elonga... 80 8e-14
gi|296202184|ref|XP_002748289.1| PREDICTED: transcription elonga... 80 9e-14
gi|119571503|gb|EAW51118.1| suppressor of Ty 6 homolog (S. cerev... 80 9e-14
gi|119571504|gb|EAW51119.1| suppressor of Ty 6 homolog (S. cerev... 80 9e-14
gi|40788888|dbj|BAA11479.2| KIAA0162 [Homo sapiens] 80 9e-14
gi|27597090|ref|NP_003161.2| transcription elongation factor SPT... 80 9e-14
gi|300797661|ref|NP_001180055.1| transcription elongation factor... 80 9e-14
gi|73967004|ref|XP_868217.1| PREDICTED: similar to suppressor of... 80 1e-13
gi|73967008|ref|XP_868225.1| PREDICTED: similar to suppressor of... 80 1e-13
gi|73966996|ref|XP_537747.2| PREDICTED: similar to suppressor of... 80 1e-13
gi|73967000|ref|XP_868206.1| PREDICTED: similar to suppressor of... 80 1e-13
gi|332256074|ref|XP_003277142.1| PREDICTED: transcription elonga... 79 2e-13
gi|73967002|ref|XP_868212.1| PREDICTED: similar to suppressor of... 78 4e-13
gi|297700360|ref|XP_002827255.1| PREDICTED: transcription elonga... 78 4e-13
gi|37359802|dbj|BAC97879.1| mKIAA0162 protein [Mus musculus] 78 4e-13
gi|301753064|ref|XP_002912369.1| PREDICTED: transcription elonga... 78 4e-13
gi|149724106|ref|XP_001504206.1| PREDICTED: transcription elonga... 78 4e-13
gi|1401078|gb|AAC50821.1| putative chromatin structure regulator... 78 4e-13
gi|73967006|ref|XP_868221.1| PREDICTED: similar to suppressor of... 78 4e-13
gi|281350545|gb|EFB26129.1| hypothetical protein PANDA_000112 [A... 78 4e-13
gi|300797099|ref|NP_001178749.1| transcription elongation factor... 78 4e-13
gi|297272225|ref|XP_001106850.2| PREDICTED: transcription elonga... 78 4e-13
gi|1401057|gb|AAB18950.1| Supt6h [Mus musculus] 78 4e-13
gi|166091434|ref|NP_033323.2| transcription elongation factor SP... 78 4e-13
gi|21620092|gb|AAH33074.1| SUPT6H protein [Homo sapiens] 78 4e-13
gi|13277574|gb|AAH03696.1| SUPT6H protein [Homo sapiens] 78 5e-13
gi|73966994|ref|XP_868195.1| PREDICTED: similar to suppressor of... 77 7e-13
gi|13277566|gb|AAH03692.1|AAH03692 Similar to suppressor of Ty (... 77 7e-13
gi|74182700|dbj|BAE34691.1| unnamed protein product [Mus musculus] 77 7e-13
gi|118404546|ref|NP_001072665.1| suppressor of Ty 6 homolog isof... 77 7e-13
>gi|332848238|ref|XP_001143115.2| PREDICTED: transcription elongation factor SPT6 isoform 5 [Pan
troglodytes]
Length = 1726
Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|296202184|ref|XP_002748289.1| PREDICTED: transcription elongation factor SPT6-like [Callithrix
jacchus]
Length = 1726
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|119571503|gb|EAW51118.1| suppressor of Ty 6 homolog (S. cerevisiae), isoform CRA_c [Homo
sapiens]
Length = 1738
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1649 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1708
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1709 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1738
>gi|119571504|gb|EAW51119.1| suppressor of Ty 6 homolog (S. cerevisiae), isoform CRA_d [Homo
sapiens]
Length = 1679
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1590 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1649
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1650 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1679
>gi|40788888|dbj|BAA11479.2| KIAA0162 [Homo sapiens]
Length = 1730
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1641 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1700
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1701 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1730
>gi|27597090|ref|NP_003161.2| transcription elongation factor SPT6 [Homo sapiens]
gi|51701986|sp|Q7KZ85.2|SPT6H_HUMAN RecName: Full=Transcription elongation factor SPT6; Short=hSPT6;
AltName: Full=Tat-cotransactivator 2 protein;
Short=Tat-CT2 protein
gi|119571502|gb|EAW51117.1| suppressor of Ty 6 homolog (S. cerevisiae), isoform CRA_b [Homo
sapiens]
gi|152013052|gb|AAI50269.1| Suppressor of Ty 6 homolog (S. cerevisiae) [Homo sapiens]
gi|187950373|gb|AAI36525.1| Suppressor of Ty 6 homolog (S. cerevisiae) [Homo sapiens]
gi|187951489|gb|AAI36523.1| Suppressor of Ty 6 homolog (S. cerevisiae) [Homo sapiens]
gi|224487751|dbj|BAH24110.1| suppressor of Ty 6 homolog [synthetic construct]
Length = 1726
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|300797661|ref|NP_001180055.1| transcription elongation factor SPT6 [Bos taurus]
gi|297486544|ref|XP_002695794.1| PREDICTED: suppressor of Ty 6 homolog [Bos taurus]
gi|296476939|gb|DAA19054.1| suppressor of Ty 6 homolog [Bos taurus]
Length = 1726
Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|73967004|ref|XP_868217.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 6 [Canis
familiaris]
Length = 1767
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1678 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1737
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1738 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1767
>gi|73967008|ref|XP_868225.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 8 [Canis
familiaris]
Length = 1719
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1630 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1689
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1690 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1719
>gi|73966996|ref|XP_537747.2| PREDICTED: similar to suppressor of Ty 6 homolog isoform 1 [Canis
familiaris]
Length = 1726
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|73967000|ref|XP_868206.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 4 [Canis
familiaris]
Length = 1669
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1580 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1639
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1640 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1669
>gi|332256074|ref|XP_003277142.1| PREDICTED: transcription elongation factor SPT6 [Nomascus leucogenys]
Length = 1704
Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQA+T KS++H+ I+WGKMAEQWL +
Sbjct: 1615 QLQANTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1674
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1675 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1704
>gi|73967002|ref|XP_868212.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 5 [Canis
familiaris]
Length = 1679
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1590 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1649
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1650 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1679
>gi|297700360|ref|XP_002827255.1| PREDICTED: transcription elongation factor SPT6-like [Pongo abelii]
Length = 1671
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1582 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1641
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1642 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1671
>gi|37359802|dbj|BAC97879.1| mKIAA0162 protein [Mus musculus]
Length = 1229
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1140 QLQASTTPQSTQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1199
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1200 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1229
>gi|301753064|ref|XP_002912369.1| PREDICTED: transcription elongation factor SPT6-like [Ailuropoda
melanoleuca]
Length = 1726
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|149724106|ref|XP_001504206.1| PREDICTED: transcription elongation factor SPT6 [Equus caballus]
Length = 1726
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|1401078|gb|AAC50821.1| putative chromatin structure regulator [Homo sapiens]
gi|119571501|gb|EAW51116.1| suppressor of Ty 6 homolog (S. cerevisiae), isoform CRA_a [Homo
sapiens]
Length = 1603
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1514 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1573
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1574 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1603
>gi|73967006|ref|XP_868221.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 7 [Canis
familiaris]
Length = 1708
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1619 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1678
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1679 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1708
>gi|281350545|gb|EFB26129.1| hypothetical protein PANDA_000112 [Ailuropoda melanoleuca]
Length = 1636
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1547 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1606
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1607 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1636
>gi|300797099|ref|NP_001178749.1| transcription elongation factor SPT6 [Rattus norvegicus]
gi|109491416|ref|XP_001080796.1| PREDICTED: suppressor of Ty 6 homolog [Rattus norvegicus]
Length = 1726
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSTQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|297272225|ref|XP_001106850.2| PREDICTED: transcription elongation factor SPT6-like [Macaca mulatta]
Length = 1670
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1581 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1640
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1641 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1670
>gi|1401057|gb|AAB18950.1| Supt6h [Mus musculus]
Length = 1726
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSTQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|166091434|ref|NP_033323.2| transcription elongation factor SPT6 [Mus musculus]
gi|51701937|sp|Q62383.2|SPT6H_MOUSE RecName: Full=Transcription elongation factor SPT6
gi|49119662|gb|AAH72657.1| Suppressor of Ty 6 homolog (S. cerevisiae) [Mus musculus]
gi|56206007|emb|CAI24323.1| suppressor of Ty 6 homolog (S. cerevisiae) [Mus musculus]
Length = 1726
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 1637 QLQASTTPQSTQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1696
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1697 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1726
>gi|21620092|gb|AAH33074.1| SUPT6H protein [Homo sapiens]
Length = 603
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 514 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 573
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 574 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 603
>gi|13277574|gb|AAH03696.1| SUPT6H protein [Homo sapiens]
Length = 1076
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 987 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 1046
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 1047 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 1076
>gi|73966994|ref|XP_868195.1| PREDICTED: similar to suppressor of Ty 6 homolog isoform 2 [Canis
familiaris]
Length = 658
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 569 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 628
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 629 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 658
>gi|13277566|gb|AAH03692.1|AAH03692 Similar to suppressor of Ty (S.cerevisiae) 6 homolog [Homo sapiens]
Length = 448
Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 359 QLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 418
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 419 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 448
>gi|74182700|dbj|BAE34691.1| unnamed protein product [Mus musculus]
Length = 658
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 48/90 (53%)
Query: 2 QLQASTXXXXXXXXXXXXXXXXXXXXXXKSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXM 61
QLQAST KS++H+ I+WGKMAEQWL +
Sbjct: 569 QLQASTTPQSTQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQWLQEKEAERRKQKQRL 628
Query: 62 TPWPSPSPMIESPPKFIAGDSPPLLGEMDR 91
TP PSPSPMIES P IAGD+ PLL EMDR
Sbjct: 629 TPRPSPSPMIESTPMSIAGDATPLLDEMDR 658
>gi|118404546|ref|NP_001072665.1| suppressor of Ty 6 homolog isoform 1 [Xenopus (Silurana)
tropicalis]
gi|115313457|gb|AAI23964.1| Spt6 gene product [Xenopus (Silurana) tropicalis]
Length = 519
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 42/62 (67%)
Query: 30 KSHNHSTIEWGKMAEQWLXXXXXXXXXXXXXMTPWPSPSPMIESPPKFIAGDSPPLLGEM 89
KS+NH+ I+WGKMAEQWL +TP PSPSPMIES P +AGD+ PLL EM
Sbjct: 458 KSNNHTAIDWGKMAEQWLQEKEAERRKQKQRVTPRPSPSPMIESTPMSVAGDATPLLDEM 517
Query: 90 DR 91
DR
Sbjct: 518 DR 519
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.311 0.129 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 571,765,140
Number of extensions: 14927071
Number of successful extensions: 28833
Number of sequences better than 10.0: 45
Number of HSP's gapped: 28892
Number of HSP's successfully gapped: 45
Length of query: 91
Length of database: 5,058,227,080
Length adjustment: 61
Effective length of query: 30
Effective length of database: 4,156,785,428
Effective search space: 124703562840
Effective search space used: 124703562840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)