BLASTP 2.2.24 [Aug-08-2010] Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= Eten_3629_orf6 (101 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 14,777,732 sequences; 5,058,227,080 total letters
Score E Sequences producing significant alignments: (bits) Value gi|169622113|ref|XP_001804466.1| hypothetical protein SNOG_14271... 37 0.75 >gi|169622113|ref|XP_001804466.1| hypothetical protein SNOG_14271 [Phaeosphaeria nodorum SN15] gi|160704698|gb|EAT78508.2| hypothetical protein SNOG_14271 [Phaeosphaeria nodorum SN15] Length = 1541 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 23 HQGRDPVRRLKAASSPVVRTTNHSGSALGGGLKATITAVPECSPTDHNAVRCSDCGKQ 80 H R+P RL+A S+P TT HSGS +G +T + P + D S KQ Sbjct: 1427 HDAREPEVRLEADSTPSTPTTQHSGSRVG----STFSRSPSIAINDRPTTGLSTASKQ 1480 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Jul 22, 2011 4:42 PM Number of letters in database: 5,058,227,080 Number of sequences in database: 14,777,732 Lambda K H 0.321 0.130 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 14777732 Number of Hits to DB: 961,775,745 Number of extensions: 33166663 Number of successful extensions: 90235 Number of sequences better than 10.0: 3 Number of HSP's gapped: 91079 Number of HSP's successfully gapped: 3 Length of query: 101 Length of database: 5,058,227,080 Length adjustment: 70 Effective length of query: 31 Effective length of database: 4,023,785,840 Effective search space: 124737361040 Effective search space used: 124737361040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 76 (33.9 bits)