BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_3629_orf3
         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|240256475|ref|NP_201137.5| nuclear protein X1 [Arabidopsis th...    35     2.6  
gi|238481625|ref|NP_001154792.1| nuclear protein X1 [Arabidopsis...    35     4.9  

>gi|240256475|ref|NP_201137.5| nuclear protein X1 [Arabidopsis thaliana]
 gi|327488242|sp|Q9FGW9.2|GTE10_ARATH RecName: Full=Transcription factor GTE10; AltName:
           Full=Bromodomain-containing protein GTE10; AltName:
           Full=Nuclear protein X1; AltName: Full=Protein GLOBAL
           TRANSCRIPTION FACTOR GROUP E10
 gi|332010349|gb|AED97732.1| nuclear protein X1 [Arabidopsis thaliana]
          Length = 1061

 Score = 35.4 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 7   PHRSHRCRAGPRPFPSNCLANTLSCHKRKEPQRLQALRSQHSNLRRQDTRLHSLSSSAVQ 66
           P+  H C  GPR  P    A  +    +K P     +RS     ++  +RL+  +S  V 
Sbjct: 104 PYNDHSCSDGPRRPPPENFATFVGSQGKKRP----PVRSDKQRNKKGPSRLNVPTSYTVA 159

Query: 67  PQLLRCHRLNHRLQRYQQG 85
             +  C  L +RL  ++ G
Sbjct: 160 SVMKECETLLNRLWSHKSG 178


>gi|238481625|ref|NP_001154792.1| nuclear protein X1 [Arabidopsis thaliana]
 gi|238481627|ref|NP_001154793.1| nuclear protein X1 [Arabidopsis thaliana]
 gi|10177441|dbj|BAB10737.1| unnamed protein product [Arabidopsis thaliana]
 gi|50253452|gb|AAT71928.1| At5g63330 [Arabidopsis thaliana]
 gi|60543335|gb|AAX22265.1| At5g63330 [Arabidopsis thaliana]
 gi|332010350|gb|AED97733.1| nuclear protein X1 [Arabidopsis thaliana]
 gi|332010351|gb|AED97734.1| nuclear protein X1 [Arabidopsis thaliana]
          Length = 477

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 7   PHRSHRCRAGPRPFPSNCLANTLSCHKRKEPQRLQALRSQHSNLRRQDTRLHSLSSSAVQ 66
           P+  H C  GPR  P    A  +    +K P     +RS     ++  +RL+  +S  V 
Sbjct: 104 PYNDHSCSDGPRRPPPENFATFVGSQGKKRP----PVRSDKQRNKKGPSRLNVPTSYTVA 159

Query: 67  PQLLRCHRLNHRLQRYQQG 85
             +  C  L +RL  ++ G
Sbjct: 160 SVMKECETLLNRLWSHKSG 178


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.327    0.131    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 959,676,956
Number of extensions: 30411432
Number of successful extensions: 103323
Number of sequences better than 10.0: 9
Number of HSP's gapped: 104178
Number of HSP's successfully gapped: 9
Length of query: 105
Length of database: 5,058,227,080
Length adjustment: 73
Effective length of query: 32
Effective length of database: 3,979,452,644
Effective search space: 127342484608
Effective search space used: 127342484608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 76 (33.9 bits)