BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_3629_orf2
         (493 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|257057137|ref|YP_003134969.1| choline dehydrogenase [Saccharo...    39     1.6  

>gi|257057137|ref|YP_003134969.1| choline dehydrogenase [Saccharomonospora viridis DSM 43017]
 gi|256587009|gb|ACU98142.1| choline dehydrogenase [Saccharomonospora viridis DSM 43017]
          Length = 554

 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 6/149 (4%)

Query: 188 FGSRAQNALAAGLPVHTAEVGDVTGAAPVTDTSVPVGFLSSANGVYKVP---RFPSGVQS 244
           FG+  + A  AG P+ +   G         D ++  G   SA+  Y  P   R    VQ 
Sbjct: 159 FGAFLEAAKQAGYPLTSDVNGYQQEGFAAFDRNIKNGRRWSASRAYLHPVKHRPNLTVQC 218

Query: 245 VSEPNEDAIK-KCILRISASQMTSGFSDTLKSGGVQITGSAFS--QLLRLVGTSSPRYTS 301
           ++  N+     K  + +S ++     S+ +  G V + G A +  QLL+L G   PR+  
Sbjct: 219 LTHVNQVLFNGKKAIGVSVTRFGRRKSENIYGGEVILCGGAINTPQLLQLSGVGDPRHLQ 278

Query: 302 KLSAPIVLFQRAVGTRISYEIRVAVPQGC 330
            L  PIV     VG  +   + V V   C
Sbjct: 279 PLGIPIVQDLPGVGENLQDHLEVYVQHAC 307


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.318    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 4,132,004,368
Number of extensions: 149481973
Number of successful extensions: 333177
Number of sequences better than 10.0: 2
Number of HSP's gapped: 333975
Number of HSP's successfully gapped: 2
Length of query: 493
Length of database: 5,058,227,080
Length adjustment: 144
Effective length of query: 349
Effective length of database: 2,930,233,672
Effective search space: 1022651551528
Effective search space used: 1022651551528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)