BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_2232_orf4
         (170 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|35210476|dbj|BAC87934.1| glyceraldehyde-3-phosphate dehydroge...    34     8.9  
gi|58618206|gb|AAW80668.1| chloroplast glyceraldehyde-3-phosphat...    34     9.1  

>gi|35210476|dbj|BAC87934.1| glyceraldehyde-3-phosphate dehydrogenase [Heterocapsa triquetra]
          Length = 300

 Score = 33.9 bits (76), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 28  EKPYFQVPSRENGSHLVPLLGVPMESCRPYSATVPLSSEVTCTGCSTKGLCVFALCLHAV 87
           +K  F  P++++ SH V ++GV  E+   Y +++     V+C  C+T GL     C++  
Sbjct: 104 KKVVFSAPAKDD-SHTV-VMGVNQET---YKSSMEC---VSCASCTTNGLAPLVKCINDA 155

Query: 88  VPLNQKRAHALDAPWICQEIQDGRSRQKW 116
             + +     + A    Q   DG S++ W
Sbjct: 156 FGIRRGLMTTIHAMTASQPTVDGASKKDW 184


>gi|58618206|gb|AAW80668.1| chloroplast glyceraldehyde-3-phosphate dehydrogenase [Heterocapsa
           triquetra]
          Length = 392

 Score = 33.9 bits (76), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 28  EKPYFQVPSRENGSHLVPLLGVPMESCRPYSATVPLSSEVTCTGCSTKGLCVFALCLHAV 87
           +K  F  P++++ SH V ++GV  E+   Y +++     V+C  C+T GL     C++  
Sbjct: 196 KKVVFSAPAKDD-SHTV-VMGVNQET---YKSSMEC---VSCASCTTNGLAPLVKCINDA 247

Query: 88  VPLNQKRAHALDAPWICQEIQDGRSRQKW 116
             + +     + A    Q   DG S++ W
Sbjct: 248 FGIRRGLMTTIHAMTASQPTVDGASKKDW 276


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.321    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,478,127,392
Number of extensions: 53684641
Number of successful extensions: 100156
Number of sequences better than 10.0: 4
Number of HSP's gapped: 100855
Number of HSP's successfully gapped: 4
Length of query: 170
Length of database: 5,058,227,080
Length adjustment: 129
Effective length of query: 41
Effective length of database: 3,151,899,652
Effective search space: 129227885732
Effective search space used: 129227885732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)