BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_2232_orf3
         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325002279|ref|ZP_08123391.1| transcriptional regulator, MerR ...    37     0.68 
gi|306821556|ref|ZP_07455154.1| hydroxyethylthiazole kinase [Eub...    36     2.0  

>gi|325002279|ref|ZP_08123391.1| transcriptional regulator, MerR family protein [Pseudonocardia sp.
           P1]
          Length = 243

 Score = 37.4 bits (85), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 3   YRKLWLGFRGRTLKHCVCASLAETLTALPQCTDKPGPAAYKVGRYEEKAAANYTVRETPR 62
           YR   +G   R L+    A+L   L+ALP   D P  A   +   + +AAA+   R T R
Sbjct: 36  YRHYDVGHLVRLLRITRMAALGIPLSALPGVLDDPAAAEELLDELDRRAAADIE-RLTAR 94

Query: 63  KCMKSSQTASSSPCGLPIRLSAISAEAPVGVPGE 96
           +   ++  +S +P  LP  LSA  +    G P +
Sbjct: 95  RADIAALRSSGAPPDLPPELSAWRSAPGEGTPAD 128


>gi|306821556|ref|ZP_07455154.1| hydroxyethylthiazole kinase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550301|gb|EFM38294.1| hydroxyethylthiazole kinase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 270

 Score = 35.8 bits (81), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 11  RGRTLKHC--VCASLAETLTALPQCTDKPGPAAYKVGRYEEKAAANYTVRETPRKCMKSS 68
           +   + H   +C +++E   ++   T K     YK   Y  K    Y  + T   CM +S
Sbjct: 142 KNMEINHIAKICKNISEKYDSVVTATGKNDIIVYKNDTYVVKNGVAYMSKITGTGCMSAS 201

Query: 69  QTASSSPCGL-PIRLSAISAEAPVGVPGE 96
            TAS        I LS + A A +GV GE
Sbjct: 202 VTASFLAANKDDILLSTVYAIATMGVAGE 230


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.316    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,097,345,281
Number of extensions: 37406448
Number of successful extensions: 91092
Number of sequences better than 10.0: 3
Number of HSP's gapped: 92022
Number of HSP's successfully gapped: 3
Length of query: 111
Length of database: 5,058,227,080
Length adjustment: 79
Effective length of query: 32
Effective length of database: 3,890,786,252
Effective search space: 124505160064
Effective search space used: 124505160064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)