BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_2023_orf5
         (157 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|294888962|ref|XP_002772642.1| wimple/ift172, putative [Perkin...    39     0.28 
gi|47499241|gb|AAT28386.1| capsid protein [Bovine enteric calici...    35     2.5  
gi|194765138|ref|XP_001964684.1| GF23317 [Drosophila ananassae] ...    35     4.9  

>gi|294888962|ref|XP_002772642.1| wimple/ift172, putative [Perkinsus marinus ATCC 50983]
 gi|239877052|gb|EER04458.1| wimple/ift172, putative [Perkinsus marinus ATCC 50983]
          Length = 1335

 Score = 38.9 bits (89), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 28   WVAKWWVRGPMRRGLSTRQ--------FPAAVKMEVKSCLYSPAVLGTFPASTSAKICCT 79
            WV  W V   +++ + TRQ        + AA+      C YSP V+  +P   S+K+ CT
Sbjct: 1244 WVLGWSVDNRVQQQMKTRQCDGCENEIYAAALVCPKCDCRYSPCVVTGYPVLASSKVECT 1303

Query: 80   CCQ 82
             C+
Sbjct: 1304 NCR 1306


>gi|47499241|gb|AAT28386.1| capsid protein [Bovine enteric calicivirus]
          Length = 522

 Score = 35.4 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 36  GPMRRGLSTRQFPAAVKMEVKSCLYSPAVLGTFPASTS 73
           GP+ + +S+R FPA+V+ +   C  S  +LGT P+S++
Sbjct: 241 GPIMQMMSSRTFPASVQFQNGRCTLSGDLLGTTPSSSA 278


>gi|194765138|ref|XP_001964684.1| GF23317 [Drosophila ananassae]
 gi|190614956|gb|EDV30480.1| GF23317 [Drosophila ananassae]
          Length = 520

 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%)

Query: 2   MPLGKKSGSLRAREAKKGKRDFDRFLWVAKWWVRGPMRRGLSTRQFPAAVKMEVKSCLYS 61
           + L +K+ +L+        +  D  L V K  +   +R G S +Q    V +     LY 
Sbjct: 227 LKLNEKADALKVVNIALTDKPHDIKLLVKKMEIEALIRTGTSNQQPQPKVGLSRSPTLYE 286

Query: 62  PAVLGTFPASTSAKICC 78
               G +PAST +K+ C
Sbjct: 287 MGCRGMYPASTDSKLVC 303


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.326    0.136    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,062,592,810
Number of extensions: 31570371
Number of successful extensions: 74858
Number of sequences better than 10.0: 4
Number of HSP's gapped: 75041
Number of HSP's successfully gapped: 4
Length of query: 157
Length of database: 5,058,227,080
Length adjustment: 119
Effective length of query: 38
Effective length of database: 3,299,676,972
Effective search space: 125387724936
Effective search space used: 125387724936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 76 (33.9 bits)