BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_2023_orf2
         (178 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|261211560|ref|ZP_05925848.1| sigma factor RpoE negative regul...    36     2.1  
gi|170094736|ref|XP_001878589.1| predicted protein [Laccaria bic...    35     3.6  

>gi|261211560|ref|ZP_05925848.1| sigma factor RpoE negative regulatory protein RseA [Vibrio sp.
           RC341]
 gi|260839515|gb|EEX66141.1| sigma factor RpoE negative regulatory protein RseA [Vibrio sp.
           RC341]
          Length = 204

 Score = 36.2 bits (82), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 117 WKLARGQAPA--HRPPHPPLGHPQKSVEISFA-LFGFPRP-QTPRLLPQWHSSFG 167
           W +A   A A  + P H PL H QK +++  A L   P+P Q  R LP W + FG
Sbjct: 54  WNIAESVALALENEPAHNPLTHSQKVIDLQQARLEAQPKPQQAKRQLPTWLTQFG 108


>gi|170094736|ref|XP_001878589.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647043|gb|EDR11288.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1146

 Score = 35.4 bits (80), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 97  KSSQDSWGVQTALHFHLNCCWKLARGQAPAHRPPHPP-----LGHPQKSV--EISFALFG 149
           + ++ SW  +    ++L+ CWKL+R     H P H       L HP   +   I + +  
Sbjct: 469 RRTEGSWKREFIARYNLSRCWKLSRNVTTTHDPLHTAITSVHLMHPLSVLASSIQYGIVS 528

Query: 150 FPRPQTPRLLPQW------HSSFGAGQPGSAFAAN 178
              P T ++LP +       +  G G P + F+ +
Sbjct: 529 RSIPLTGKVLPGYLDASGFRAGLGIGNPTTQFSPD 563


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.321    0.135    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,174,956,788
Number of extensions: 41167257
Number of successful extensions: 97754
Number of sequences better than 10.0: 9
Number of HSP's gapped: 98753
Number of HSP's successfully gapped: 9
Length of query: 178
Length of database: 5,058,227,080
Length adjustment: 130
Effective length of query: 48
Effective length of database: 3,137,121,920
Effective search space: 150581852160
Effective search space used: 150581852160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)