BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_1902_orf3
(180 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|151945925|gb|EDN64157.1| hypothetical protein SCY_4399 [Sacch... 36 2.0
gi|323303442|gb|EGA57237.1| YMR221C-like protein [Saccharomyces ... 36 2.6
gi|256271575|gb|EEU06617.1| YMR221C-like protein [Saccharomyces ... 36 2.7
gi|6323877|ref|NP_013948.1| hypothetical protein YMR221C [Saccha... 36 2.7
gi|207342146|gb|EDZ70003.1| YMR221Cp-like protein [Saccharomyces... 35 4.9
gi|323353163|gb|EGA85463.1| YMR221C-like protein [Saccharomyces ... 35 5.3
gi|259148806|emb|CAY82051.1| EC1118_1M3_4203p [Saccharomyces cer... 35 5.5
gi|258651345|ref|YP_003200501.1| type I site-specific deoxyribon... 35 5.8
>gi|151945925|gb|EDN64157.1| hypothetical protein SCY_4399 [Saccharomyces cerevisiae YJM789]
Length = 332
Score = 36.2 bits (82), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116
NW P F + Y + +CQL P + H + + V+ GL +
Sbjct: 177 NWFPTLNVSRFFTLYLIVPVFILACQLTIMPHSSYKTVNH---IAKIAVE------GLDE 227
Query: 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKETKFFVF---KLERKS 169
NG+L G G +Q R L A+EREE + P +++ + KL++KS
Sbjct: 228 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKS 283
>gi|323303442|gb|EGA57237.1| YMR221C-like protein [Saccharomyces cerevisiae FostersB]
Length = 504
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116
NW P F + Y + +CQL P + H + + V+ GL +
Sbjct: 177 NWFPTLNVSRFFTLYLIVPVFILACQLTIMPHSSYKTVNH---IAKIAVE------GLDE 227
Query: 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKETKFFVF---KLERKS 169
NG+L G G +Q R L A+EREE + P +++ + KL++KS
Sbjct: 228 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKS 283
>gi|256271575|gb|EEU06617.1| YMR221C-like protein [Saccharomyces cerevisiae JAY291]
Length = 504
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116
NW P F + Y + +CQL P + H + + V+ GL +
Sbjct: 177 NWFPTLNVSRFFTLYLIVPVFILACQLTIMPHSSYKTVNH---IAKIAVE------GLDE 227
Query: 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKETKFFVF---KLERKS 169
NG+L G G +Q R L A+EREE + P +++ + KL++KS
Sbjct: 228 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKS 283
>gi|6323877|ref|NP_013948.1| hypothetical protein YMR221C [Saccharomyces cerevisiae S288c]
gi|2497193|sp|Q04991.1|FMP42_YEAST RecName: Full=Protein FMP42
gi|887602|emb|CAA90192.1| unknown [Saccharomyces cerevisiae]
gi|190408447|gb|EDV11712.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|285814225|tpg|DAA10120.1| TPA: hypothetical protein YMR221C [Saccharomyces cerevisiae S288c]
Length = 504
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116
NW P F + Y + +CQL P + H + + V+ GL +
Sbjct: 177 NWFPTLNVSRFFTLYLIVPVFILACQLTIMPHSSYKTVNH---IAKIAVE------GLDE 227
Query: 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKETKFFVF---KLERKS 169
NG+L G G +Q R L A+EREE + P +++ + KL++KS
Sbjct: 228 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKS 283
>gi|207342146|gb|EDZ70003.1| YMR221Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 462
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116
NW P F + Y + CQL P + H + + V+ GL +
Sbjct: 135 NWFPTLNVSRFFTLYLIVPVFILVCQLTIMPHSSYKTVNH---IAKIAVE------GLDE 185
Query: 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEP 153
NG+L G G +Q R L A+EREE + P
Sbjct: 186 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRP 222
>gi|323353163|gb|EGA85463.1| YMR221C-like protein [Saccharomyces cerevisiae VL3]
Length = 416
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116
NW P F + Y + CQL P + H + + V+ GL +
Sbjct: 177 NWFPTLNVSRFFTLYLIVPVFILVCQLTIMPHSSYKTVNH---IAKIAVE------GLDE 227
Query: 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKETKFFVF---KLERKS 169
NG+L G G +Q R L A+EREE + P +++ + KL++KS
Sbjct: 228 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKS 283
>gi|259148806|emb|CAY82051.1| EC1118_1M3_4203p [Saccharomyces cerevisiae EC1118]
gi|323332141|gb|EGA73552.1| YMR221C-like protein [Saccharomyces cerevisiae AWRI796]
gi|323347037|gb|EGA81313.1| YMR221C-like protein [Saccharomyces cerevisiae Lalvin QA23]
Length = 504
Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 63 NWIP------FLSFYEACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQ 116
NW P F + Y + CQL P + H + + V+ GL +
Sbjct: 177 NWFPTLNVSRFFTLYLIVPVFILVCQLTIMPHSSYKTVNH---IAKIAVE------GLDE 227
Query: 117 NGKLKRGILCLGAALKQQLRVRLGAVEREERRLGPEPMYKETKFFVF---KLERKS 169
NG+L G G +Q R L A+EREE + P +++ + KL++KS
Sbjct: 228 NGRLIEGDTGSGIIPDEQERQSLIAIEREEDSIPSRPQRRKSVLETYVEDKLQKKS 283
>gi|258651345|ref|YP_003200501.1| type I site-specific deoxyribonuclease, HsdR family [Nakamurella
multipartita DSM 44233]
gi|258554570|gb|ACV77512.1| type I site-specific deoxyribonuclease, HsdR family [Nakamurella
multipartita DSM 44233]
Length = 1066
Score = 34.7 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 73 ACTCAVSSCQLPSPPTQGNQVAQHRKVMRSVLVKPCGRMFGLRQNGKLKRGILCLG---- 128
A ++ L SP T GNQVA+ + +RS + GR L + L G L
Sbjct: 757 AIAATATANYLRSPETPGNQVAEGEEPLRSQFRQTAGR---LTRAWALAAGDPGLADQKW 813
Query: 129 -AALKQQLRVRLGAVEREERRLGPEPMYKETKFFVFKLERKSDYS 172
+++R+ +G + +ER+ EP+ +E + + L +S S
Sbjct: 814 DVQFYEEVRIYMGKFDADERQANGEPVPEEIELLLSSLIAESTAS 858
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.324 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,461,826,267
Number of extensions: 52589975
Number of successful extensions: 121377
Number of sequences better than 10.0: 9
Number of HSP's gapped: 121947
Number of HSP's successfully gapped: 9
Length of query: 180
Length of database: 5,058,227,080
Length adjustment: 130
Effective length of query: 50
Effective length of database: 3,137,121,920
Effective search space: 156856096000
Effective search space used: 156856096000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)