BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_1800_orf2
         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|159185913|ref|NP_356783.2| hypothetical protein Atu3843 [Agro...    34     6.4  

>gi|159185913|ref|NP_356783.2| hypothetical protein Atu3843 [Agrobacterium tumefaciens str. C58]
 gi|159141047|gb|AAK89568.2| Hypothetical Protein Atu3843 [Agrobacterium tumefaciens str. C58]
          Length = 380

 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 11/84 (13%)

Query: 1   PSGFPVAPNKTRSQAQMIRAWKGGNRGGEP-------KIELKETAESGKKASRQADRIKR 53
           P+ F +   KTR Q +M R+  G  +GG P       K E  + +  G+ A R    +K 
Sbjct: 49  PTSFDIDDEKTRQQLRMSRSVGGWYKGGRPATRVPSRKAEDYKVSAEGRDAPRYMREVKN 108

Query: 54  L-KSAKRG---LLPAPEKTLRIVL 73
           L + AK G   ++P P  T  ++ 
Sbjct: 109 LYEDAKPGDLVIIPGPGYTSEVLF 132


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.311    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 760,252,548
Number of extensions: 24484974
Number of successful extensions: 57992
Number of sequences better than 10.0: 5
Number of HSP's gapped: 58543
Number of HSP's successfully gapped: 5
Length of query: 78
Length of database: 5,058,227,080
Length adjustment: 49
Effective length of query: 29
Effective length of database: 4,334,118,212
Effective search space: 125689428148
Effective search space used: 125689428148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)