BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_1648_orf8
         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115459524|ref|NP_001053362.1| Os04g0526300 [Oryza sativa Japo...    34     8.4  

>gi|115459524|ref|NP_001053362.1| Os04g0526300 [Oryza sativa Japonica Group]
 gi|38344441|emb|CAE05647.2| OSJNBa0038O10.13 [Oryza sativa Japonica Group]
 gi|113564933|dbj|BAF15276.1| Os04g0526300 [Oryza sativa Japonica Group]
 gi|116310962|emb|CAH67898.1| OSIGBa0115K01-H0319F09.4 [Oryza sativa Indica Group]
 gi|125549090|gb|EAY94912.1| hypothetical protein OsI_16714 [Oryza sativa Indica Group]
          Length = 346

 Score = 33.9 bits (76), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 17/32 (53%)

Query: 17  PRLPKRHTPFTGFPGAAPHASCCNHLVCLDPK 48
           PRL   H PFT  P AA  + C    VC DPK
Sbjct: 144 PRLFATHVPFTSLPSAAAASGCKVVYVCRDPK 175


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.320    0.133    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,012,936,871
Number of extensions: 32062255
Number of successful extensions: 50619
Number of sequences better than 10.0: 3
Number of HSP's gapped: 50943
Number of HSP's successfully gapped: 3
Length of query: 143
Length of database: 5,058,227,080
Length adjustment: 107
Effective length of query: 36
Effective length of database: 3,477,009,756
Effective search space: 125172351216
Effective search space used: 125172351216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)