BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_1648_orf6
         (124 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|168013254|ref|XP_001759316.1| predicted protein [Physcomitrel...    34     6.5  
gi|302775122|ref|XP_002970978.1| hypothetical protein SELMODRAFT...    34     8.3  

>gi|168013254|ref|XP_001759316.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689629|gb|EDQ76000.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 828

 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 5   NAPRRNTSGREKTGTVAPP-------NGSRVTAHLHTLTSEEANHGLCGPCSIARPVVSA 57
           N   +NT G + T   A P         S  +A+  T + EEA H LCGP    RP+   
Sbjct: 55  NGKEKNTLGWKSTHLSARPLTICRVAGVSSDSANTETESKEEAGHRLCGPPLRGRPLPFG 114

Query: 58  VESVSEGI 65
             +  EG+
Sbjct: 115 ATACEEGV 122


>gi|302775122|ref|XP_002970978.1| hypothetical protein SELMODRAFT_441343 [Selaginella moellendorffii]
 gi|300160960|gb|EFJ27576.1| hypothetical protein SELMODRAFT_441343 [Selaginella moellendorffii]
          Length = 769

 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 36/75 (48%), Gaps = 18/75 (24%)

Query: 5   NAPRRNTSGREKTGTVAPP----NGSRVTAHLHTLTSEEANHGLCGPCSIARPVVSAVES 60
           N P  NT  RE+T TV PP    NGSRV AH   L +E   HG         PV  AV+S
Sbjct: 515 NGPSENT--RERTETVTPPKPSSNGSRVQAHSKHLDNE---HG-----DAKGPVEEAVKS 564

Query: 61  VS----EGILRGNGL 71
            S    E + R  GL
Sbjct: 565 ESSDGEEAMQRNVGL 579


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.314    0.129    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,229,294,211
Number of extensions: 43748654
Number of successful extensions: 87975
Number of sequences better than 10.0: 9
Number of HSP's gapped: 88741
Number of HSP's successfully gapped: 9
Length of query: 124
Length of database: 5,058,227,080
Length adjustment: 90
Effective length of query: 34
Effective length of database: 3,728,231,200
Effective search space: 126759860800
Effective search space used: 126759860800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.9 bits)