BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_1315_orf1
(228 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|237838611|ref|XP_002368603.1| hypothetical protein TGME49_064... 140 1e-31
gi|221505521|gb|EEE31166.1| conserved hypothetical protein [Toxo... 140 1e-31
gi|325115414|emb|CBZ50969.1| conserved hypothetical protein [Neo... 137 1e-30
gi|299473303|emb|CBN77702.1| conserved unknown protein [Ectocarp... 39 0.84
gi|302844759|ref|XP_002953919.1| hypothetical protein VOLCADRAFT... 37 2.3
gi|159463700|ref|XP_001690080.1| importin beta [Chlamydomonas re... 37 2.3
gi|32476119|ref|NP_869113.1| hypothetical protein RB9867 [Rhodop... 37 3.2
gi|327539416|gb|EGF26032.1| hypothetical protein RBWH47_01227 [R... 36 4.1
gi|119714672|ref|YP_921637.1| methylthioribose kinase [Nocardioi... 36 4.7
>gi|237838611|ref|XP_002368603.1| hypothetical protein TGME49_064740 [Toxoplasma gondii ME49]
gi|211966267|gb|EEB01463.1| hypothetical protein TGME49_064740 [Toxoplasma gondii ME49]
Length = 878
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 127/248 (51%), Gaps = 26/248 (10%)
Query: 2 KLALPATYMSTLTDVNVPKYAGKVGSQNLGVVDQLKDGIRLIDVRLWRDERVADPLSGWF 61
+LALPAT STL DVN P+Y +QN+ V QL DGIR DVR WR+ R W+
Sbjct: 89 ELALPATVHSTLNDVNAPRYMELTHAQNVDVTRQLYDGIRSFDVRPWRNSRDGK----WY 144
Query: 62 TEVPWRLFEDAELLK------SLANKKTIGTLSAAEAEALNVHSRTDLVEGLFKPVLQFL 115
+E PWRL ED L+ S + I L A +++HSRT L E LF+PV +FL
Sbjct: 145 SEAPWRLEEDLVSLRKAVSAFSQLSTSPIPALPNALQSIIDLHSRTSLEESLFRPVQRFL 204
Query: 116 RKSRTEVAVVVFSAVNGNTHTKRNAIVKGSELGESL------------AHAEKQLESFLQ 163
R + +EVAVVVFS +NGN N++ + S LG L A L +F +
Sbjct: 205 RSNGSEVAVVVFSTLNGNRRGAINSVEQASSLGAMLKRYAEYNQPGAKADPTNPLPAFNE 264
Query: 164 SGGPYSDNEH---DVEPQNQPAAPSVVRVGPHSAYYSPLLDSFVKKSVTFNHFAEITELI 220
P H DV+ + + +P+ V P S + S V+K + + + ELI
Sbjct: 265 LASPKFVEGHPGGDVDRKGKGKSPTFEVVSPSDPTAS-FMTSAVRKPLMYEDVQALLELI 323
Query: 221 DKFWGALL 228
D++WG LL
Sbjct: 324 DRYWGQLL 331
>gi|221505521|gb|EEE31166.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 878
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/248 (37%), Positives = 127/248 (51%), Gaps = 26/248 (10%)
Query: 2 KLALPATYMSTLTDVNVPKYAGKVGSQNLGVVDQLKDGIRLIDVRLWRDERVADPLSGWF 61
+LALPAT STL DVN P+Y +QN+ V QL DGIR DVR WR+ R W+
Sbjct: 89 ELALPATVHSTLNDVNAPRYMELTHAQNVDVTRQLYDGIRSFDVRPWRNSRDGK----WY 144
Query: 62 TEVPWRLFEDAELLK------SLANKKTIGTLSAAEAEALNVHSRTDLVEGLFKPVLQFL 115
+E PWRL ED L+ S + I L A +++HSRT L E LF+PV +FL
Sbjct: 145 SEAPWRLEEDLVSLRKAVSAFSQLSTSPIPALPNALQSIIDLHSRTSLEESLFRPVQRFL 204
Query: 116 RKSRTEVAVVVFSAVNGNTHTKRNAIVKGSELGESL------------AHAEKQLESFLQ 163
R + +EVAVVVFS +NGN N++ + S LG L A L +F +
Sbjct: 205 RSNGSEVAVVVFSTLNGNRRGAINSVEQASSLGAMLKRYAEYNQPGAKADPTNPLPAFNE 264
Query: 164 SGGPYSDNEH---DVEPQNQPAAPSVVRVGPHSAYYSPLLDSFVKKSVTFNHFAEITELI 220
P H DV+ + + +P+ V P S + S V+K + + + ELI
Sbjct: 265 LASPKFVEGHPGGDVDRKGKGKSPTFEVVSPSDPTAS-FMTSAVRKPLMYEDVQALLELI 323
Query: 221 DKFWGALL 228
D++WG LL
Sbjct: 324 DRYWGQLL 331
>gi|325115414|emb|CBZ50969.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 880
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/252 (36%), Positives = 127/252 (50%), Gaps = 34/252 (13%)
Query: 2 KLALPATYMSTLTDVNVPKYAGKVGSQNLGVVDQLKDGIRLIDVRLWRDERVADPLSGWF 61
+LALPAT STLTDV P+Y +QN+ + QL DGIR DVR WR+ R W+
Sbjct: 90 ELALPATVHSTLTDVTAPRYMDLTHAQNVDINRQLYDGIRSFDVRPWRNSRDGR----WY 145
Query: 62 TEVPWRLFEDAELLKSLANKKT------IGTLSAAEAEALNVHSRTDLVEGLFKPVLQFL 115
+E PWRL ED L+ + + I L + +++HSRT L + LF+PV +FL
Sbjct: 146 SEAPWRLEEDLVTLRKAVSSFSQLSSSPIAALPHSLQNTIDLHSRTTLEDSLFRPVQRFL 205
Query: 116 RKSRTEVAVVVFSAVNGNTHTKRNAIVKGSELGESLAHAEKQLESFLQSGG--------- 166
R + +EVAVVVFSA+NGN N++ + S LG L K+ + Q G
Sbjct: 206 RSNGSEVAVVVFSALNGNRRGGVNSVEQASSLGAML----KRYADYNQPGAKADPSSPLP 261
Query: 167 PYSDNEHDVEPQNQPAA----------PSVVRVGPHSAYYSPLLDSFVKKSVTFNHFAEI 216
P+SD + P P+ V P S + S V+K +T+ +
Sbjct: 262 PFSDLSSPTFVEGHPGGDTNRKGKGKPPTFEVVSPSDPSAS-FMTSAVRKPLTYEDVQAL 320
Query: 217 TELIDKFWGALL 228
ELID++WG LL
Sbjct: 321 LELIDEYWGQLL 332
>gi|299473303|emb|CBN77702.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 495
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 2 KLALPATYMSTLTDVNVPKYAGKVGSQNLGVVDQLKDGIRLIDVRL 47
+++LP T+ S ++ P + +QNLGV+ QLK G+R++D+R
Sbjct: 197 EMSLPGTHDSGTAKMHNPVVSPWATTQNLGVLAQLKAGVRVLDLRC 242
>gi|302844759|ref|XP_002953919.1| hypothetical protein VOLCADRAFT_82561 [Volvox carteri f.
nagariensis]
gi|300260731|gb|EFJ44948.1| hypothetical protein VOLCADRAFT_82561 [Volvox carteri f.
nagariensis]
Length = 857
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 32 VVDQLKDGIRLIDVRLWRDERVADPLSGWFTEVPWRLFEDAELLKSLANKKTIGTLSAAE 91
VV + D +R + + E PLS + ++ L+E AE +S A + G A
Sbjct: 471 VVYYVCDALRFLALGFQSSEGETTPLSPYLKDLVQNLYETAERFRS-APCENSGKAQVAA 529
Query: 92 AEALNVHSRTDLVEGLFKPVLQFLRKSRTEVAVVVFSAVNGNTHTKRNAIVKGSELGESL 151
EA+N DLV + L+F+ + VV A+N N T+ + + E +
Sbjct: 530 YEAIN-----DLVRSSARDTLEFVGT----LLQVVLGAINTNLETQ----ITSHQAAEKM 576
Query: 152 AHAEKQLESFLQ 163
A + QL LQ
Sbjct: 577 ATLQGQLCGMLQ 588
>gi|159463700|ref|XP_001690080.1| importin beta [Chlamydomonas reinhardtii]
gi|158284068|gb|EDP09818.1| importin beta [Chlamydomonas reinhardtii]
Length = 832
Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 38 DGIRLIDVRLWRDERVADPLSGWFTEVPWRLFEDAELLKSLANKKTIGTLSAAEAEALNV 97
D IRL+ + + PLS + ++ +L+E AE+ ++ +++ G A EA+N
Sbjct: 477 DAIRLLALGFNTGDADTSPLSPFLKDLIQKLYEAAEVFRNHPSQENSGKAQIAAYEAIN- 535
Query: 98 HSRTDLVEGLFKPVLQFLRKSRTEVAVVVFSAVNGNTHTKRNAIVKGS-ELGESLAHAEK 156
DLV + L+F+ T VV +A+N N A+ GS + E +A +
Sbjct: 536 ----DLVRTSARDTLEFVGTLLT----VVLNAINANL-----AVPLGSQQAAEKMATLQG 582
Query: 157 QLESFLQ 163
Q LQ
Sbjct: 583 QFCGMLQ 589
>gi|32476119|ref|NP_869113.1| hypothetical protein RB9867 [Rhodopirellula baltica SH 1]
gi|32446663|emb|CAD76499.1| hypothetical protein RB9867 [Rhodopirellula baltica SH 1]
Length = 209
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 45 VRLWRDERVADPLSGWFTEVPWRLFEDAELL--KSLANKKTIGTLSAAEA----EALNVH 98
VR W DE +A+P SGW V + + EL + +A ++ AE + LN
Sbjct: 29 VRRWHDEPMANPYSGWLRWVCQQHAFNFELWHEEDVARNPSVTDARIAEVKRSIDRLN-Q 87
Query: 99 SRTDLVEGLFKPVLQFLRKSRTEVAVVVFSAVNGNTHTKRNAIVKGSELGESLAHAEKQL 158
R D +E L + + +++S +VVV NT T +AI + S + L H +QL
Sbjct: 88 QRNDWIEKLDDAITESIQQS----SVVVAEDAPINTETPGSAIDRLSIMSLRLFHYAEQL 143
Query: 159 E 159
+
Sbjct: 144 Q 144
>gi|327539416|gb|EGF26032.1| hypothetical protein RBWH47_01227 [Rhodopirellula baltica WH47]
Length = 209
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 45 VRLWRDERVADPLSGWFTEVPWRLFEDAELL--KSLANKKTIGTLSAAEA----EALNVH 98
VR W DE +A+P SGW V + + EL + +A + AE + LN
Sbjct: 29 VRRWHDEPMANPYSGWLRWVCQQHAFNFELWHEEDVARNPNVTDARIAEVKRSIDRLN-Q 87
Query: 99 SRTDLVEGLFKPVLQFLRKSRTEVAVVVFSAVNGNTHTKRNAIVKGSELGESLAHAEKQL 158
R D +E L + + +++S +VVV NT T +AI + S + L H +QL
Sbjct: 88 QRNDWIEKLDDAITESIQQS----SVVVAENAPINTETPGSAIDRLSIMSLRLFHYAEQL 143
Query: 159 E 159
+
Sbjct: 144 Q 144
>gi|119714672|ref|YP_921637.1| methylthioribose kinase [Nocardioides sp. JS614]
gi|119535333|gb|ABL79950.1| 5'-methylthioribose kinase [Nocardioides sp. JS614]
Length = 409
Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 30 LGVVDQLKDGIR---------LIDVRLWRDERVADPLSGWFTEVPWRLFEDAELLKSLAN 80
LG+V Q DG +D R+WRD+ + D L W E W LF A++ +
Sbjct: 296 LGLVQQTWDGFEGEFRRRWPSRLDARVWRDDTLQDLLREWENEA-W-LFAAAKM-----S 348
Query: 81 KKTIGTLSAAEAEALNVHSRTDLVEGLFKPVLQFLRKSRTE 121
++ +G A+ E L R G+ + +R S +E
Sbjct: 349 RRIVGAAKTADIETLPEELREGAARGVLRAARTLVRHSTSE 389
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.316 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 2,162,311,395
Number of extensions: 85950744
Number of successful extensions: 242702
Number of sequences better than 10.0: 18
Number of HSP's gapped: 244363
Number of HSP's successfully gapped: 18
Length of query: 228
Length of database: 5,058,227,080
Length adjustment: 134
Effective length of query: 94
Effective length of database: 3,078,010,992
Effective search space: 289333033248
Effective search space used: 289333033248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)