BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_1292_orf1
(157 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|221507979|gb|EEE33566.1| conserved hypothetical protein [Toxo... 42 0.022
gi|237845003|ref|XP_002371799.1| hypothetical protein, conserved... 42 0.022
gi|221483509|gb|EEE21828.1| conserved hypothetical protein [Toxo... 42 0.023
gi|325118954|emb|CBZ54506.1| conserved hypothetical protein [Neo... 42 0.037
gi|114330589|ref|YP_746811.1| ribosomal protein L18 [Nitrosomona... 39 0.20
gi|30248434|ref|NP_840504.1| ribosomal protein L18P/L5E:ribosoma... 39 0.29
gi|296120763|ref|YP_003628541.1| ribosomal protein L18 [Planctom... 37 0.74
gi|189218711|ref|YP_001939352.1| ribosomal protein L18 [Methylac... 37 1.2
gi|115376099|ref|ZP_01463344.1| ribosomal protein L18 [Stigmatel... 36 2.0
gi|33862099|ref|NP_893660.1| 50S ribosomal protein L18 [Prochlor... 34 5.7
>gi|221507979|gb|EEE33566.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 219
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 125 RRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
+R RLT TLSNN ++AC+ D Q+T+A+A+S
Sbjct: 147 KRARLTITLSNNQVHACVVDNRLQRTYAYANSF 179
>gi|237845003|ref|XP_002371799.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211969463|gb|EEB04659.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 219
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 125 RRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
+R RLT TLSNN ++AC+ D Q+T+A+A+S
Sbjct: 147 KRARLTITLSNNQVHACVVDNRLQRTYAYANSF 179
>gi|221483509|gb|EEE21828.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 219
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 125 RRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
+R RLT TLSNN ++AC+ D Q+T+A+A+S
Sbjct: 147 KRARLTITLSNNQVHACVVDNRLQRTYAYANSF 179
>gi|325118954|emb|CBZ54506.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 473
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 125 RRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
+R RLT TLSNN ++AC+ D Q+T+A+A+S
Sbjct: 404 KRARLTITLSNNQVHACVVDNRLQRTYAYANSF 436
>gi|114330589|ref|YP_746811.1| ribosomal protein L18 [Nitrosomonas eutropha C91]
gi|114307603|gb|ABI58846.1| LSU ribosomal protein L18P [Nitrosomonas eutropha C91]
Length = 120
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 122 SSSRRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
S+S+R RL SNNHIYA I DPS AS++
Sbjct: 22 SNSKRFRLLVHKSNNHIYAQILDPSSNNVVVSASTV 57
>gi|30248434|ref|NP_840504.1| ribosomal protein L18P/L5E:ribosomal protein L18 [Nitrosomonas
europaea ATCC 19718]
gi|73621631|sp|Q820Q8.1|RL18_NITEU RecName: Full=50S ribosomal protein L18
gi|30138320|emb|CAD84328.1| Ribosomal protein L18P/L5E:Ribosomal protein L18 [Nitrosomonas
europaea ATCC 19718]
Length = 119
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 123 SSRRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
+SR+ RL+ SNNHIYA I DPS + AS++
Sbjct: 22 NSRQFRLSVHKSNNHIYAQILDPSSNRVIVSASTV 56
>gi|296120763|ref|YP_003628541.1| ribosomal protein L18 [Planctomyces limnophilus DSM 3776]
gi|296013103|gb|ADG66342.1| ribosomal protein L18 [Planctomyces limnophilus DSM 3776]
Length = 120
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 21/35 (60%)
Query: 123 SSRRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
SS RLRLT SN HIYA I D QT AS++
Sbjct: 24 SSGRLRLTVFRSNKHIYAQIVDDVAGQTLVSASTV 58
>gi|189218711|ref|YP_001939352.1| ribosomal protein L18 [Methylacidiphilum infernorum V4]
gi|189185569|gb|ACD82754.1| Ribosomal protein L18 [Methylacidiphilum infernorum V4]
Length = 125
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 128 RLTATLSNNHIYACITDPSGQQTFAFASSM 157
RL+ SNNHIYA + + +T AFAS+M
Sbjct: 36 RLSVYFSNNHIYAQLINDEEGRTLAFASTM 65
>gi|115376099|ref|ZP_01463344.1| ribosomal protein L18 [Stigmatella aurantiaca DW4/3-1]
gi|310821010|ref|YP_003953368.1| 50S ribosomal protein L18 [Stigmatella aurantiaca DW4/3-1]
gi|115366914|gb|EAU65904.1| ribosomal protein L18 [Stigmatella aurantiaca DW4/3-1]
gi|309394082|gb|ADO71541.1| 50S ribosomal protein L18 [Stigmatella aurantiaca DW4/3-1]
Length = 117
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 123 SSRRLRLTATLSNNHIYACITDPSGQQTFAFASSM 157
SS R RLT S HIYA + D S +T A+ASS+
Sbjct: 21 SSERPRLTVYKSLKHIYAQVVDDSTGKTLAYASSL 55
>gi|33862099|ref|NP_893660.1| 50S ribosomal protein L18 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|73621672|sp|Q7UZV9.1|RL18_PROMP RecName: Full=50S ribosomal protein L18
gi|33634317|emb|CAE20002.1| 50S ribosomal protein L18 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 122
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 128 RLTATLSNNHIYACITDPSGQQTFAFASSM 157
RL SNNHIYA + D QQT AS++
Sbjct: 29 RLAVFRSNNHIYAQVIDDDAQQTICSASTV 58
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.319 0.128 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 995,205,519
Number of extensions: 19320895
Number of successful extensions: 28709
Number of sequences better than 10.0: 13
Number of HSP's gapped: 28746
Number of HSP's successfully gapped: 13
Length of query: 157
Length of database: 5,058,227,080
Length adjustment: 119
Effective length of query: 38
Effective length of database: 3,299,676,972
Effective search space: 125387724936
Effective search space used: 125387724936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)