BLASTP 2.2.24 [Aug-08-2010]
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eten_0469_orf2
(200 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
14,777,732 sequences; 5,058,227,080 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|259145030|emb|CAY78295.1| Cdc39p [Saccharomyces cerevisiae EC... 39 0.55
gi|256270168|gb|EEU05392.1| Cdc39p [Saccharomyces cerevisiae JAY... 39 0.55
gi|207347218|gb|EDZ73470.1| YCR093Wp-like protein [Saccharomyces... 39 0.55
gi|190406509|gb|EDV09776.1| general negative regulator of transc... 39 0.55
gi|151943903|gb|EDN62203.1| CCR4-NOT transcriptional complex sub... 39 0.55
gi|287911|emb|CAA49721.1| CDC39 [Saccharomyces cerevisiae] 39 0.55
gi|10383811|ref|NP_010017.2| Cdc39p [Saccharomyces cerevisiae S2... 39 0.55
gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsil... 35 4.5
>gi|259145030|emb|CAY78295.1| Cdc39p [Saccharomyces cerevisiae EC1118]
Length = 2108
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 146 VKATLLLHVQHQQLRPEAEVFPDTAFAMDEVACLLAQDGAP 186
V+A L + ++ RP E+ P FA+DEV+C + Q+GAP
Sbjct: 742 VEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAP 782
>gi|256270168|gb|EEU05392.1| Cdc39p [Saccharomyces cerevisiae JAY291]
Length = 2109
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 146 VKATLLLHVQHQQLRPEAEVFPDTAFAMDEVACLLAQDGAP 186
V+A L + ++ RP E+ P FA+DEV+C + Q+GAP
Sbjct: 742 VEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAP 782
>gi|207347218|gb|EDZ73470.1| YCR093Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1518
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 146 VKATLLLHVQHQQLRPEAEVFPDTAFAMDEVACLLAQDGAP 186
V+A L + ++ RP E+ P FA+DEV+C + Q+GAP
Sbjct: 152 VEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAP 192
>gi|190406509|gb|EDV09776.1| general negative regulator of transcription subunit 1
[Saccharomyces cerevisiae RM11-1a]
Length = 2108
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 146 VKATLLLHVQHQQLRPEAEVFPDTAFAMDEVACLLAQDGAP 186
V+A L + ++ RP E+ P FA+DEV+C + Q+GAP
Sbjct: 742 VEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAP 782
>gi|151943903|gb|EDN62203.1| CCR4-NOT transcriptional complex subunit [Saccharomyces cerevisiae
YJM789]
Length = 2108
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 146 VKATLLLHVQHQQLRPEAEVFPDTAFAMDEVACLLAQDGAP 186
V+A L + ++ RP E+ P FA+DEV+C + Q+GAP
Sbjct: 742 VEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAP 782
>gi|287911|emb|CAA49721.1| CDC39 [Saccharomyces cerevisiae]
Length = 2108
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 146 VKATLLLHVQHQQLRPEAEVFPDTAFAMDEVACLLAQDGAP 186
V+A L + ++ RP E+ P FA+DEV+C + Q+GAP
Sbjct: 742 VEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAP 782
>gi|10383811|ref|NP_010017.2| Cdc39p [Saccharomyces cerevisiae S288c]
gi|308153578|sp|P25655.3|NOT1_YEAST RecName: Full=General negative regulator of transcription subunit
1; AltName: Full=Cell division cycle protein 39
gi|14588961|emb|CAA42248.2| nuclear protein [Saccharomyces cerevisiae]
gi|285810778|tpg|DAA07562.1| TPA: Cdc39p [Saccharomyces cerevisiae S288c]
Length = 2108
Score = 38.5 bits (88), Expect = 0.55, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 146 VKATLLLHVQHQQLRPEAEVFPDTAFAMDEVACLLAQDGAP 186
V+A L + ++ RP E+ P FA+DEV+C + Q+GAP
Sbjct: 742 VEAATLANAPKERSRPVQEMIPLKFFAVDEVSCQINQEGAP 782
>gi|254386752|ref|ZP_05002044.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
gi|194345589|gb|EDX26555.1| DNA polymerase III subunit epsilon [Streptomyces sp. Mg1]
Length = 246
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 107 PGISTPEAAAVVAGNSTSRAAAQRVGPLCCRLLQHVCTQVKATLLLHVQHQQLRPEAEVF 166
PGI PE A+ + G ST+RA A+ R ++ V +V A L+ H + R V
Sbjct: 49 PGIPIPEQASAIHGISTARAVAE------GRPVREVAQEVAAALVEHWR----RGAVVVA 98
Query: 167 PDTAFAMDEVACLLAQDGAPNGSDN 191
+ AF + ++ LA+ G P+ SD
Sbjct: 99 YNAAFDLTLLSAELARHGLPSLSDR 123
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: Jul 22, 2011 4:42 PM
Number of letters in database: 5,058,227,080
Number of sequences in database: 14,777,732
Lambda K H
0.322 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 1,490,314,305
Number of extensions: 44279877
Number of successful extensions: 78033
Number of sequences better than 10.0: 8
Number of HSP's gapped: 78229
Number of HSP's successfully gapped: 8
Length of query: 200
Length of database: 5,058,227,080
Length adjustment: 132
Effective length of query: 68
Effective length of database: 3,107,566,456
Effective search space: 211314519008
Effective search space used: 211314519008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)