BLASTP 2.2.24 [Aug-08-2010] 

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eten_0469_orf1
         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           14,777,732 sequences; 5,058,227,080 total letters

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|291302833|ref|YP_003514111.1| ArsR family transcriptional reg...    35     3.5  
gi|308495262|ref|XP_003109819.1| CRE-PQN-87 protein [Caenorhabdi...    34     6.8  

>gi|291302833|ref|YP_003514111.1| ArsR family transcriptional regulator [Stackebrandtia nassauensis
           DSM 44728]
 gi|290572053|gb|ADD45018.1| transcriptional regulator, ArsR family [Stackebrandtia nassauensis
           DSM 44728]
          Length = 355

 Score = 35.0 bits (79), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 26/56 (46%)

Query: 57  DRQRATSRAGCSIGCSTGHQYSRSSSCCGWKQHKQSSSAARGTSLLQTAAACLHPG 112
           +RQR  ++ GC++G  T HQY    S  G+     + +A  G  +       + PG
Sbjct: 300 ERQRVEAQIGCAVGTLTTHQYRDMLSAIGFGDIDITLTADHGAGIHSAIVQAIKPG 355


>gi|308495262|ref|XP_003109819.1| CRE-PQN-87 protein [Caenorhabditis remanei]
 gi|308244656|gb|EFO88608.1| CRE-PQN-87 protein [Caenorhabditis remanei]
          Length = 1518

 Score = 34.3 bits (77), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 58  RQRATSRAGCSIGCSTGHQYSRSSSCCGWKQHKQSSSAARGTSLLQTAAA 107
           +++A +R GC +GC T  + + S+S    +QH QSS  +   +  QTA  
Sbjct: 10  KKKARTRIGCDVGCQT--EQTSSASISYVQQHNQSSQPSSNATSQQTAGG 57


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Jul 22, 2011  4:42 PM
  Number of letters in database: 5,058,227,080
  Number of sequences in database:  14,777,732
  
Lambda     K      H
   0.317    0.127    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 14777732
Number of Hits to DB: 839,447,925
Number of extensions: 18888300
Number of successful extensions: 43556
Number of sequences better than 10.0: 4
Number of HSP's gapped: 43811
Number of HSP's successfully gapped: 4
Length of query: 133
Length of database: 5,058,227,080
Length adjustment: 98
Effective length of query: 35
Effective length of database: 3,610,009,344
Effective search space: 126350327040
Effective search space used: 126350327040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)